Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40238
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa... 97 2e-21
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 35 0.012
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos... 30 0.25
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 1.8
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 27 1.8
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 27 1.8
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 27 1.8
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 1.8
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 27 2.3
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 26 4.1
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M... 26 5.4
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce... 25 7.2
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 25 7.2
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 7.2
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 25 9.5
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 25 9.5
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi... 25 9.5
>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 502
Score = 97.1 bits (231), Expect = 2e-21
Identities = 40/87 (45%), Positives = 62/87 (71%)
Frame = +3
Query: 255 KYFQGRGTNTHAYTHSVADGHHVFLNLNTLKFYCLPDNYEVIDSSLNDIKYVLNPTFTPE 434
+YFQGRG ++HAY H++ + HHVF+N +TLKFY LP++Y+V S+L DI YV+ PTFT
Sbjct: 94 RYFQGRGPSSHAYFHALTENHHVFVNCSTLKFYVLPESYQVESSALQDIAYVMRPTFTKL 153
Query: 435 QIKLIDTNTKMSRAIDGTMYMPGIVAL 515
+++ +D ++S + Y+PG V +
Sbjct: 154 EVQRLDHTPQLSYDLMLKPYVPGFVGM 180
Score = 71.7 bits (168), Expect = 8e-14
Identities = 30/43 (69%), Positives = 36/43 (83%)
Frame = +1
Query: 154 YLDTINRHVLDFDFEKLCSVSLTRINVYACLVCGNIFREEAPT 282
YLDTINR +LDFDFEK+CSVSLT ++VYACLVCG F+ P+
Sbjct: 60 YLDTINRKLLDFDFEKVCSVSLTNLSVYACLVCGRYFQGRGPS 102
Score = 47.6 bits (108), Expect = 2e-06
Identities = 19/36 (52%), Positives = 25/36 (69%)
Frame = +2
Query: 509 GLNNIKANDYCNVILQCLSQVRPLRNYFLRARLCSC 616
G+NNIK NDY NV++ L+ V+P RNYFL +C
Sbjct: 179 GMNNIKNNDYFNVVIHMLAHVKPFRNYFLLKNFDNC 214
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 34.7 bits (76), Expect = 0.012
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +2
Query: 506 CGLNNIKANDYCNVILQCLSQVRPLRNYF 592
CGL+N+ Y N LQCL+ R LR++F
Sbjct: 311 CGLSNLGNTCYMNSALQCLTHTRELRDFF 339
>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 849
Score = 30.3 bits (65), Expect = 0.25
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 506 CGLNNIKANDYCNVILQCLSQVRPLRNYFL 595
CGL N+ + Y N LQC+ L YFL
Sbjct: 279 CGLYNLGNSCYMNSALQCMIHTHELTKYFL 308
>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -2
Query: 174 PIDSIQVRTLNLLSFRISSLFVSPIFISYFAFSRLFF 64
P+DS+++ + SF + FVS + F FS F
Sbjct: 277 PVDSVKINLIRERSFNLLKNFVSASLFNVFLFSGTVF 313
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 27.5 bits (58), Expect = 1.8
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Frame = +3
Query: 231 CLRLLSVRKYFQGRGTNTHAYTHSVADGHHVFLNLNTLK------FYCLPDNYEVIDSSL 392
C L RK + G G N HA +H GH + + L ++ YC + E ID ++
Sbjct: 189 CGALSCGRKQYGGGGGNGHALSHYDDTGHPLAVKLKSISPDGQADIYCYSCDEERIDPNI 248
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Frame = +1
Query: 67 EQSRKRKITDENGTDKQGRYSKTQQIQCPYL-------DTINRHVLDFDFEK 201
+Q KR EN T + +SK + I CPY D + RH+ F +K
Sbjct: 34 DQCAKRFTRHENLTRHKACHSKAEPIPCPYCEIKCKRKDLLKRHIQRFHNDK 85
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 482 WHNVYAWHCGLNNIKANDYCNVILQCLSQVRPLRNYFL 595
W N+ GL N+ + N +LQ ++Q PL Y L
Sbjct: 117 WDNIMPNAPGLVNLGNTCFMNSVLQLMTQTPPLVQYLL 154
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 148 CPYLDTINRHVLDFDFEKLCSVSLTRINVYACLVCGNI 261
CP + V +F+ C+V +++ CL+CGNI
Sbjct: 244 CPVC-RYTQKVQSSEFQSKCTVCCYDKDLWICLICGNI 280
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +3
Query: 351 YCLPDNYEVIDSSLNDIKYVLNPTFTPEQIKLIDTNTKMSRAIDGTMYM-PGIVALIIS 524
YCL D+ E ID S+N + + + +PEQ+ + + + I+ ++ P + +IS
Sbjct: 758 YCL-DDLECIDQSINSLVSKMLTSASPEQVDVNILFFQFGKLIETNKFLHPEVYPTLIS 815
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 131 KLNKFNVLTWILSIGMF*ILT 193
+LN +++TW+ SIG+F I T
Sbjct: 1238 RLNLISLITWMFSIGVFWIWT 1258
>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1115
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 503 HCGLNNIKANDYCNVILQCLSQV 571
+ GL N YCN +LQ LS V
Sbjct: 499 YAGLETDITNSYCNSVLQLLSYV 521
>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 563
Score = 25.4 bits (53), Expect = 7.2
Identities = 16/72 (22%), Positives = 29/72 (40%)
Frame = +1
Query: 25 TTLSKVYDSNKMTEEQSRKRKITDENGTDKQGRYSKTQQIQCPYLDTINRHVLDFDFEKL 204
TT ++ + +K+K TDE D + +S + Y + LDF
Sbjct: 70 TTTIEIPVVKRRNLRNQKKKKKTDEEAEDNEDTFSMNSRAGFSYKAREHTGKLDFCAHCN 129
Query: 205 CSVSLTRINVYA 240
C ++T + Y+
Sbjct: 130 CRFTITPYSKYS 141
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +3
Query: 348 FYCLPDNYEVIDSSLNDIKYVLNPTFTPEQIKLID 452
FY +E++D+ + D V++P F + + L+D
Sbjct: 1261 FYLKQGGFELLDTIITDFSNVMDPDF--DDVSLLD 1293
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = -2
Query: 399 CHSMKSQ*LH-NCQEDNRTLMC*DSK 325
CH + Q + N + DNRT+ C D K
Sbjct: 104 CHDCRKQIIDSNFKRDNRTIFCNDCK 129
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 25.0 bits (52), Expect = 9.5
Identities = 8/30 (26%), Positives = 19/30 (63%)
Frame = +3
Query: 327 LNLNTLKFYCLPDNYEVIDSSLNDIKYVLN 416
++L+T++F + YE ++ + D KY+ +
Sbjct: 388 MDLSTMEFRLRNNQYESVEEFIRDAKYIFD 417
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.0 bits (52), Expect = 9.5
Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +3
Query: 279 NTHAYTHSVADGHHVFLNLNTLKFYCLPDNYEVID-SSLNDIKYVLNPTFTPEQIKLIDT 455
N H VA H V + + + + +++I +SL +KY L P TP ++ +D+
Sbjct: 281 NVTRLPHLVAIRHGVAFSYSERSVSAMRNTFQLIKWASL--LKYPLVPELTPAVVENLDS 338
Query: 456 NTKMSRAI 479
++ ++ A+
Sbjct: 339 DSYLAIAL 346
>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -2
Query: 375 LH-NCQEDNRTLMC*DSKIHGVHQPLNVCRHEC 280
LH N QE + TL + + +N CRH+C
Sbjct: 531 LHTNLQESSETLAIGEIPFDKFRRYINYCRHKC 563
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,682,043
Number of Sequences: 5004
Number of extensions: 55903
Number of successful extensions: 191
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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