Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40238
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0075 - 14340458-14340551,14340643-14340814,14340895-143410...   104   5e-23
06_03_0968 - 26402154-26403834,26404322-26404383,26404473-264046...    37   0.012
08_02_1014 - 23586552-23587224,23587402-23587463,23587735-235879...    34   0.11 
09_04_0435 - 17545879-17546605,17546721-17546782,17547123-175473...    31   0.80 
07_01_0861 + 7152976-7153061,7153222-7153310,7154862-7155013,715...    29   4.2  
02_02_0236 + 8135641-8135795,8136167-8136557,8136640-8136931,813...    28   5.6  
02_05_0890 - 32546918-32547088,32547224-32547334,32547705-325478...    28   7.4  
12_01_0651 - 5507935-5509638                                           27   9.8  

>09_04_0075 -
           14340458-14340551,14340643-14340814,14340895-14341066,
           14341617-14341811,14341886-14342053,14342150-14342335,
           14342797-14342881,14342896-14343206,14344222-14344569
          Length = 576

 Score =  104 bits (250), Expect = 5e-23
 Identities = 53/109 (48%), Positives = 68/109 (62%), Gaps = 22/109 (20%)
 Frame = +3

Query: 255 KYFQGRGTNTHAYTHSVADGHHVFLNLNTLKFYCLPDNYEVIDSSLNDIKYVLNPT---- 422
           KY+QGRG  +HAYTHS+  GHHVF+NL T K YCLPD YE+ D SL DI++VLNP     
Sbjct: 143 KYYQGRGLKSHAYTHSLEAGHHVFINLQTEKAYCLPDGYEINDPSLEDIRHVLNPRCFSI 202

Query: 423 ------------------FTPEQIKLIDTNTKMSRAIDGTMYMPGIVAL 515
                             FT EQ++ +D N + SRA+DG+ Y+PG+V L
Sbjct: 203 VAHVNSSNELRAMQFFDWFTTEQVRNLDRNKQWSRALDGSNYLPGMVGL 251



 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 36/78 (46%), Positives = 51/78 (65%), Gaps = 5/78 (6%)
 Frame = +1

Query: 49  SNKMTEEQSRKRKITDENGTD-KQGRYSKTQQIQ----CPYLDTINRHVLDFDFEKLCSV 213
           +N   EE+  +    DE   D ++    + +Q++    CPYLDT+NR VLDFDFEK CS+
Sbjct: 69  ANGRHEEEEEEDDDDDEVDNDVRRAPERRPRQVELRRDCPYLDTVNRQVLDFDFEKFCSI 128

Query: 214 SLTRINVYACLVCGNIFR 267
           SL+ +NVYACLVCG  ++
Sbjct: 129 SLSNLNVYACLVCGKYYQ 146



 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 17/29 (58%), Positives = 22/29 (75%)
 Frame = +2

Query: 509 GLNNIKANDYCNVILQCLSQVRPLRNYFL 595
           GLNNIK  D+ NV +Q L ++ PLRN+FL
Sbjct: 250 GLNNIKETDFVNVTIQSLMRITPLRNFFL 278


>06_03_0968 -
           26402154-26403834,26404322-26404383,26404473-26404682,
           26404776-26404860,26405461-26405618,26405745-26405868,
           26405955-26406123,26406202-26406287,26406379-26406467,
           26406564-26406735,26407820-26408193
          Length = 1069

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +2

Query: 482 WHNVYAWHCGLNNIKANDYCNVILQCLSQVRPLRNYFL 595
           W ++    CGL N   + + NV+LQCLS  RPL  Y L
Sbjct: 196 WRDLDYLPCGLLNCGNSCFANVVLQCLSCTRPLAAYLL 233


>08_02_1014 -
           23586552-23587224,23587402-23587463,23587735-23587950,
           23588125-23588209,23589232-23589389,23589505-23589625,
           23590081-23590243,23590330-23590415,23590660-23590742,
           23590816-23591677,23593266-23593693
          Length = 978

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +2

Query: 509 GLNNIKANDYCNVILQCLSQVRPLRNYFL 595
           GL+N+  + Y N +LQCL   RPL +Y L
Sbjct: 451 GLHNLGNSCYANAVLQCLMFTRPLTSYLL 479


>09_04_0435 -
           17545879-17546605,17546721-17546782,17547123-17547335,
           17547506-17547590,17547904-17548061,17548174-17548294,
           17548765-17548927,17548973-17549097,17550800-17550888,
           17550970-17551636,17552671-17552717,17553506-17553862
          Length = 937

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +2

Query: 509 GLNNIKANDYCNVILQCLSQVRPLRNYF---LRARLCS 613
           GL N+  + Y N +LQCL+  RPL  Y    L +R C+
Sbjct: 380 GLVNLGNSCYANAVLQCLAFTRPLTAYLTEGLHSRNCN 417


>07_01_0861 +
           7152976-7153061,7153222-7153310,7154862-7155013,
           7155254-7155382,7155465-7155581,7156353-7156496,
           7156749-7156851,7157471-7157565,7157953-7158096
          Length = 352

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +2

Query: 491 VYAWHCGLNNIKANDYCNVILQCLSQVRPLRNYFLRARL 607
           +Y WHCG +  K    CNV           ++Y+ R +L
Sbjct: 279 LYIWHCGTHRPKLQWICNVKFMMKGPKDESQDYYKRQQL 317


>02_02_0236 +
           8135641-8135795,8136167-8136557,8136640-8136931,
           8137117-8137271,8137363-8137451,8137623-8137967,
           8139046-8139169,8139424-8139581,8139673-8139757,
           8140094-8140306,8141314-8141375,8141466-8141951,
           8142472-8142568
          Length = 883

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 509 GLNNIKANDYCNVILQCLSQVRPLRNYFL 595
           GL N   + Y N +LQCL   +PL  Y L
Sbjct: 354 GLFNCGNSCYANAVLQCLMCTKPLMIYLL 382


>02_05_0890 -
           32546918-32547088,32547224-32547334,32547705-32547884,
           32547960-32548064,32548333-32548431,32548524-32548679,
           32548772-32548850,32549213-32549278,32549382-32549536,
           32549675-32550034,32550150-32550305,32550779-32550856,
           32551471-32551812
          Length = 685

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +2

Query: 521 IKANDYCNVILQCLSQVRPLRNYFLRARLCSCTRPPGDSSF 643
           +  +D C V + C  Q     N  ++A +CS    PG S +
Sbjct: 490 VSGSDDCKVKVWCTKQEASAINIDMKANICSVKYNPGSSHY 530


>12_01_0651 - 5507935-5509638
          Length = 567

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 122 DIRKLNKFNVLTWILSIGMF*ILTLRNCARF 214
           DI+K  K    TW+L +G    L + +C +F
Sbjct: 432 DIKKCAKLTHATWVLQLGYLEELGIHDCPQF 462


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,062,532
Number of Sequences: 37544
Number of extensions: 312330
Number of successful extensions: 749
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)