Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40238
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12743| Best HMM Match : No HMM Matches (HMM E-Value=.)              84   8e-17
SB_26099| Best HMM Match : DUF1610 (HMM E-Value=0.45)                  83   1e-16
SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)               31   0.62 
SB_28668| Best HMM Match : UCH (HMM E-Value=8e-12)                     30   1.4  
SB_1955| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.6  

>SB_12743| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 922

 Score = 84.2 bits (199), Expect = 8e-17
 Identities = 37/58 (63%), Positives = 42/58 (72%)
 Frame = +1

Query: 94  DENGTDKQGRYSKTQQIQCPYLDTINRHVLDFDFEKLCSVSLTRINVYACLVCGNIFR 267
           +E    K    S  Q   CPYLDTINRHVLDFDFEKLCS+SL+ INVYACL+CG  F+
Sbjct: 26  EEEERRKAKEKSAYQSRHCPYLDTINRHVLDFDFEKLCSISLSHINVYACLICGKYFQ 83



 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 23/31 (74%), Positives = 28/31 (90%)
 Frame = +3

Query: 255 KYFQGRGTNTHAYTHSVADGHHVFLNLNTLK 347
           KYFQGRG +++AYTHSV  GHHV+LNL+TLK
Sbjct: 80  KYFQGRGRHSYAYTHSVQFGHHVYLNLHTLK 110


>SB_26099| Best HMM Match : DUF1610 (HMM E-Value=0.45)
          Length = 110

 Score = 83.4 bits (197), Expect = 1e-16
 Identities = 37/56 (66%), Positives = 41/56 (73%)
 Frame = +1

Query: 94  DENGTDKQGRYSKTQQIQCPYLDTINRHVLDFDFEKLCSVSLTRINVYACLVCGNI 261
           +E    K    S  Q   CPYLDTINRHVLDFDFEKLCS+SL+ INVYACL+CG I
Sbjct: 26  EEEERRKAKEKSAYQSRHCPYLDTINRHVLDFDFEKLCSISLSHINVYACLICGKI 81



 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 20/31 (64%), Positives = 25/31 (80%)
 Frame = +3

Query: 255 KYFQGRGTNTHAYTHSVADGHHVFLNLNTLK 347
           K   GRG +++AYTHSV  GHHV+LNL+TLK
Sbjct: 80  KILPGRGRHSYAYTHSVQFGHHVYLNLHTLK 110


>SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)
          Length = 1712

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 506 CGLNNIKANDYCNVILQCLSQVRPLRNYFL 595
           CGL N+    + N  LQCL  ++P + +FL
Sbjct: 464 CGLENLGNTCFMNAGLQCLFVIKPFQRFFL 493


>SB_28668| Best HMM Match : UCH (HMM E-Value=8e-12)
          Length = 893

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 509 GLNNIKANDYCNVILQCLSQVRPLRNYFL 595
           GL N+    Y N +LQCL    PL  YF+
Sbjct: 697 GLRNLGNTCYMNSVLQCLFNTAPLAAYFV 725


>SB_1955| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 292

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +1

Query: 43  YDS-NKMTEEQSRKRKITDENGTDKQGRYSKTQQIQCPYLDTINRHVLDFDFEKL 204
           YDS +  +++   KRKI  EN   K+ + +K + IQC       R + D D++++
Sbjct: 120 YDSLSSPSKKIGNKRKIDQENTDTKRFKLNKVELIQCS-----ERSLEDIDYDEV 169


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,630,433
Number of Sequences: 59808
Number of extensions: 408272
Number of successful extensions: 976
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)