Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40238
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040640-1|AAD34652.1|  602|Caenorhabditis elegans Hypothetical ...   139   2e-33
U61954-2|ABS19469.1|  957|Caenorhabditis elegans Hypothetical pr...    33   0.18 
U61954-1|AAK29810.1|  955|Caenorhabditis elegans Hypothetical pr...    33   0.18 
AF100662-1|AAC68977.1|  900|Caenorhabditis elegans Hypothetical ...    33   0.18 
Z74043-7|CAA98539.2|  705|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U50193-6|AAL32262.1| 1175|Caenorhabditis elegans Cytokinesis def...    28   5.0  
U50193-5|AAL32263.1| 1178|Caenorhabditis elegans Cytokinesis def...    28   5.0  
AF469173-1|AAL79016.1| 1175|Caenorhabditis elegans ubiquitin c-t...    28   5.0  
AF047657-3|AAK18947.2|  326|Caenorhabditis elegans Serpentine re...    28   5.0  
Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AF348166-1|AAK37544.1| 1221|Caenorhabditis elegans Toll-like rec...    27   8.7  
AC006604-2|AAF39752.2| 1221|Caenorhabditis elegans Toll (drosoph...    27   8.7  

>AF040640-1|AAD34652.1|  602|Caenorhabditis elegans Hypothetical
           protein F09D1.1 protein.
          Length = 602

 Score =  139 bits (336), Expect = 2e-33
 Identities = 62/87 (71%), Positives = 68/87 (78%)
 Frame = +3

Query: 255 KYFQGRGTNTHAYTHSVADGHHVFLNLNTLKFYCLPDNYEVIDSSLNDIKYVLNPTFTPE 434
           KYFQGRGTNTHAYTH++   HHVFLNL TLKFYCLPDNYEVID SL DIKYVL PT+T E
Sbjct: 172 KYFQGRGTNTHAYTHALETDHHVFLNLQTLKFYCLPDNYEVIDPSLEDIKYVLKPTYTKE 231

Query: 435 QIKLIDTNTKMSRAIDGTMYMPGIVAL 515
            I  ID  +KM RA D + Y PG+V L
Sbjct: 232 MIASIDKQSKMVRAYDDSTYFPGVVGL 258



 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 38/78 (48%), Positives = 49/78 (62%), Gaps = 4/78 (5%)
 Frame = +1

Query: 46  DSNKMTEEQSRKRKITDENGTDKQGRYSKTQQIQ----CPYLDTINRHVLDFDFEKLCSV 213
           +  ++ EE+ +  K  DE+  D      K Q  +    CPYLDTI+R VLDFDFEK CSV
Sbjct: 99  ERQRIIEEELKSGK-HDEHDDDPVWSMKKAQAEKKSRMCPYLDTIDRSVLDFDFEKQCSV 157

Query: 214 SLTRINVYACLVCGNIFR 267
           SL+  NVYAC+VCG  F+
Sbjct: 158 SLSHQNVYACMVCGKYFQ 175



 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 31/43 (72%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
 Frame = +2

Query: 509 GLNNIKANDYCNVILQCLSQVRPLRNYFLR-ARLCSCTRPPGD 634
           GLNNIKANDYCN ILQ LS VRPLRN+FL+ +   S  RPPGD
Sbjct: 257 GLNNIKANDYCNAILQALSAVRPLRNWFLKESNYTSIKRPPGD 299


>U61954-2|ABS19469.1|  957|Caenorhabditis elegans Hypothetical protein
            F41H10.6c protein.
          Length = 957

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 243  LSVRKYFQGRGTNTHAYTHSVADGHHVFLNLNTLKFYCLP-DNY 371
            L+  KY  GR  N HA  H ++  H + L++  L  +C P D+Y
Sbjct: 890  LTCYKYNCGRFVNEHAMMHHLSSSHPMALSMADLSVWCYPCDSY 933


>U61954-1|AAK29810.1|  955|Caenorhabditis elegans Hypothetical protein
            F41H10.6b protein.
          Length = 955

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 243  LSVRKYFQGRGTNTHAYTHSVADGHHVFLNLNTLKFYCLP-DNY 371
            L+  KY  GR  N HA  H ++  H + L++  L  +C P D+Y
Sbjct: 888  LTCYKYNCGRFVNEHAMMHHLSSSHPMALSMADLSVWCYPCDSY 931


>AF100662-1|AAC68977.1|  900|Caenorhabditis elegans Hypothetical
           protein H34C03.2 protein.
          Length = 900

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 506 CGLNNIKANDYCNVILQCLSQVRPLRNYFL 595
           CGL+N+    +     QCLS + PLR YFL
Sbjct: 275 CGLSNLGNTCFMASAFQCLSNMPPLREYFL 304


>Z74043-7|CAA98539.2|  705|Caenorhabditis elegans Hypothetical
           protein T19B10.5 protein.
          Length = 705

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -2

Query: 138 LSFRISSLFVSPIFISYFA--FSRLFFSHFITIIDFRQCS*MKNLK 7
           L+F ISSLFV P  IS  A  F  +F  +F T  D  Q    K+LK
Sbjct: 27  LTFDISSLFVLPFLISRNALLFFNVFLYYFFT--DLAQIISRKSLK 70


>U50193-6|AAL32262.1| 1175|Caenorhabditis elegans Cytokinesis defect
           protein 3, isoforma protein.
          Length = 1175

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +2

Query: 509 GLNNIKANDYCNVILQCLSQVRPLRNYFL 595
           GL N     Y N  +QCL++V PL  YFL
Sbjct: 568 GLVNYGNFCYRNAGIQCLARVSPLTQYFL 596


>U50193-5|AAL32263.1| 1178|Caenorhabditis elegans Cytokinesis defect
           protein 3, isoformb protein.
          Length = 1178

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +2

Query: 509 GLNNIKANDYCNVILQCLSQVRPLRNYFL 595
           GL N     Y N  +QCL++V PL  YFL
Sbjct: 571 GLVNYGNFCYRNAGIQCLARVSPLTQYFL 599


>AF469173-1|AAL79016.1| 1175|Caenorhabditis elegans ubiquitin
           c-terminal hydrolase protein.
          Length = 1175

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +2

Query: 509 GLNNIKANDYCNVILQCLSQVRPLRNYFL 595
           GL N     Y N  +QCL++V PL  YFL
Sbjct: 568 GLVNYGNFCYRNAGIQCLARVSPLTQYFL 596


>AF047657-3|AAK18947.2|  326|Caenorhabditis elegans Serpentine
           receptor, class h protein272 protein.
          Length = 326

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -2

Query: 162 IQVRTLNLLSFRISSLFVSPIFISYFAFSRLFFSHFITIIDF 37
           + V  L +   R   +F    F  YF F    F+HFI ++ F
Sbjct: 105 VGVAVLGIFENRFYVMFALDSFWRYFRFPFFLFNHFIAVLFF 146


>Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical
           protein F07A11.4 protein.
          Length = 1095

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 503 HCGLNNIKANDYCNVILQCLSQVRPLRNYFLR 598
           + GL NI    + N +LQ L     LR YFLR
Sbjct: 422 YTGLRNIGNTCFMNAVLQMLVNNIELREYFLR 453


>AF348166-1|AAK37544.1| 1221|Caenorhabditis elegans Toll-like
           receptor TOL-1 protein.
          Length = 1221

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 342 LKFYCLPDNYEVIDSSLNDIKYVLNPTFTPEQIKL 446
           LK+  LP+N E++++  NDI  +   + +P    L
Sbjct: 534 LKWSALPENLEILNADNNDINLLTAASMSPSTANL 568


>AC006604-2|AAF39752.2| 1221|Caenorhabditis elegans Toll
           (drosophila) family protein 1 protein.
          Length = 1221

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 342 LKFYCLPDNYEVIDSSLNDIKYVLNPTFTPEQIKL 446
           LK+  LP+N E++++  NDI  +   + +P    L
Sbjct: 534 LKWSALPENLEILNADNNDINLLTAASMSPSTANL 568


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,857,271
Number of Sequences: 27780
Number of extensions: 313845
Number of successful extensions: 866
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)