Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40238
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    26   0.36 
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              23   2.6  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   4.5  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   5.9  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = +1

Query: 37  KVYDSNKMTEEQSRKRKITDENGTDKQGRYSKTQQIQCPYLDTINRHVLDFDFEKLCSV- 213
           K +  N    E+SR     D   T+ Q   S+       +  T+N   +  D ++ CS+ 
Sbjct: 347 KQFQKNTTGLERSRSWSSLDNTNTNDQDYSSQNYLTVHSFPSTLNIPSVKIDEDQKCSIE 406

Query: 214 SLTRIN 231
           S+T +N
Sbjct: 407 SITSVN 412


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 348 FYCLPDNYEVIDSSLNDIKYVLNPTFTPEQIKLI 449
           F C+ + + V+D     I+Y L     PE  K I
Sbjct: 72  FNCVLEKFNVMDKKNGKIRYNLLKKVIPEAFKEI 105


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
 Frame = +2

Query: 209 RFH*LESMFTLA*CAEIF--SGKRHQHSCLHT 298
           R H  E  +    C   F  SGK H+H  +HT
Sbjct: 140 RIHTKERPYKCDVCERAFEHSGKLHRHMRIHT 171


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 539 CNVILQCLSQVRPLRNYFLRARLCSCT 619
           CNV+   L++   LRNY    R  +CT
Sbjct: 195 CNVLATSLTEPYTLRNY---GRRINCT 218


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,849
Number of Sequences: 438
Number of extensions: 3703
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)