Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40238
(652 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g22410.1 68417.m03238 ubiquitin carboxyl-terminal hydrolase f... 118 4e-27
At4g22350.1 68417.m03231 ubiquitin carboxyl-terminal hydrolase f... 118 4e-27
At4g22290.1 68417.m03224 ubiquitin carboxyl-terminal hydrolase f... 88 4e-18
At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase f... 38 0.004
At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase f... 38 0.006
At4g22420.1 68417.m03240 expressed protein predicted protein, Ar... 35 0.041
At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putativ... 34 0.071
At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase f... 33 0.12
At5g10790.1 68418.m01254 ubiquitin-specific protease 22 (UBP22) ... 32 0.29
At5g37210.1 68418.m04468 DC1 domain-containing protein contains ... 30 1.2
At1g29180.1 68414.m03570 DC1 domain-containing protein contains ... 30 1.5
At5g48320.1 68418.m05969 DC1 domain-containing protein contains ... 29 2.0
At4g13130.1 68417.m02045 DC1 domain-containing protein contains ... 29 2.0
At3g14400.1 68416.m01822 ubiquitin-specific protease 25 (UBP25) ... 29 2.0
At4g10590.2 68417.m01733 ubiquitin carboxyl-terminal hydrolase f... 29 2.7
At4g10590.1 68417.m01732 ubiquitin carboxyl-terminal hydrolase f... 29 2.7
At4g10570.1 68417.m01730 ubiquitin carboxyl-terminal hydrolase f... 29 2.7
At1g32850.1 68414.m04048 ubiquitin carboxyl-terminal hydrolase f... 29 3.5
At4g22370.1 68417.m03233 hypothetical protein 28 4.7
At4g15070.1 68417.m02315 DC1 domain-containing protein contains ... 28 4.7
At4g10560.1 68417.m01729 DC1 domain-containing protein contains ... 28 4.7
At2g29650.3 68415.m03602 inorganic phosphate transporter, putati... 28 4.7
At2g29650.2 68415.m03604 inorganic phosphate transporter, putati... 28 4.7
At2g29650.1 68415.m03603 inorganic phosphate transporter, putati... 28 4.7
At2g04480.1 68415.m00452 hypothetical protein 28 4.7
At1g62030.1 68414.m06996 DC1 domain-containing protein contains ... 28 4.7
At3g26550.1 68416.m03314 DC1 domain-containing protein contains ... 28 6.2
At2g42610.2 68415.m05274 expressed protein contains Pfam profile... 28 6.2
At2g42610.1 68415.m05273 expressed protein contains Pfam profile... 28 6.2
At5g45150.1 68418.m05543 ribonuclease III family protein similar... 27 8.2
At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15) ... 27 8.2
>At4g22410.1 68417.m03238 ubiquitin carboxyl-terminal hydrolase
family protein similar to U4/U6.U5 tri-snRNP-associated
65 kDa protein [Homo sapiens] GI:13926071; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 340
Score = 118 bits (283), Expect = 4e-27
Identities = 50/87 (57%), Positives = 67/87 (77%)
Frame = +3
Query: 255 KYFQGRGTNTHAYTHSVADGHHVFLNLNTLKFYCLPDNYEVIDSSLNDIKYVLNPTFTPE 434
KYFQGR +HAYTHS+ GHHV++NL T K YCLPD+YE+ D SL+DI++VLNP F+
Sbjct: 32 KYFQGRSQKSHAYTHSLEAGHHVYINLLTEKVYCLPDSYEINDPSLDDIRHVLNPRFSRA 91
Query: 435 QIKLIDTNTKMSRAIDGTMYMPGIVAL 515
Q+ +D N + SRA+DG+ Y+PG+V L
Sbjct: 92 QVNELDKNRQWSRALDGSDYLPGMVGL 118
Score = 52.0 bits (119), Expect = 3e-07
Identities = 21/30 (70%), Positives = 25/30 (83%)
Frame = +1
Query: 178 VLDFDFEKLCSVSLTRINVYACLVCGNIFR 267
VLDF FE+ CSVSL+ +NVYACLVCG F+
Sbjct: 6 VLDFHFERFCSVSLSNLNVYACLVCGKYFQ 35
Score = 37.5 bits (83), Expect = 0.008
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = +2
Query: 509 GLNNIKANDYCNVILQCLSQVRPLRNYF 592
GLNNI+ ++ NV +Q L +V PLRN+F
Sbjct: 117 GLNNIQKTEFVNVTIQSLMRVTPLRNFF 144
>At4g22350.1 68417.m03231 ubiquitin carboxyl-terminal hydrolase
family protein similar to U4/U6.U5 tri-snRNP-associated
65 kDa protein [Homo sapiens] GI:13926071; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 510
Score = 118 bits (283), Expect = 4e-27
Identities = 50/87 (57%), Positives = 67/87 (77%)
Frame = +3
Query: 255 KYFQGRGTNTHAYTHSVADGHHVFLNLNTLKFYCLPDNYEVIDSSLNDIKYVLNPTFTPE 434
KYFQGR +HAYTHS+ GHHV++NL T K YCLPD+YE+ D SL+DI++VLNP F+
Sbjct: 116 KYFQGRSQKSHAYTHSLEAGHHVYINLLTEKVYCLPDSYEINDPSLDDIRHVLNPRFSRA 175
Query: 435 QIKLIDTNTKMSRAIDGTMYMPGIVAL 515
Q+ +D N + SRA+DG+ Y+PG+V L
Sbjct: 176 QVNELDKNRQWSRALDGSDYLPGMVGL 202
Score = 81.0 bits (191), Expect = 6e-16
Identities = 33/60 (55%), Positives = 48/60 (80%), Gaps = 2/60 (3%)
Frame = +1
Query: 94 DENGTDKQGRYSKTQQIQ--CPYLDTINRHVLDFDFEKLCSVSLTRINVYACLVCGNIFR 267
D++ + +G++S+ +++ CPYLDT+NR VLDFDFE+ CSVSL+ +NVYACLVCG F+
Sbjct: 60 DDDASKGRGKHSRHVEVRRDCPYLDTVNRQVLDFDFERFCSVSLSNLNVYACLVCGKYFQ 119
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/29 (55%), Positives = 22/29 (75%)
Frame = +2
Query: 509 GLNNIKANDYCNVILQCLSQVRPLRNYFL 595
GLNNI+ ++ NV +Q L +V PLRN+FL
Sbjct: 201 GLNNIQKTEFVNVTIQSLMRVTPLRNFFL 229
>At4g22290.1 68417.m03224 ubiquitin carboxyl-terminal hydrolase
family protein similar to pVHL-interacting
deubiquitinating enzyme 1 type II [Homo sapiens]
GI:18698435; contains Pfam profile PF00443: Ubiquitin
carboxyl-terminal hydrolase
Length = 974
Score = 88.2 bits (209), Expect = 4e-18
Identities = 36/57 (63%), Positives = 46/57 (80%)
Frame = +3
Query: 255 KYFQGRGTNTHAYTHSVADGHHVFLNLNTLKFYCLPDNYEVIDSSLNDIKYVLNPTF 425
KYFQGR +HAYTHS+ GHHV++NL T K YCLPD+YE+ D SL+DI++VLNP +
Sbjct: 578 KYFQGRSQKSHAYTHSLEAGHHVYINLLTEKVYCLPDSYEINDPSLDDIRHVLNPRY 634
Score = 80.2 bits (189), Expect = 1e-15
Identities = 36/77 (46%), Positives = 54/77 (70%), Gaps = 3/77 (3%)
Frame = +1
Query: 46 DSNKMTEEQSRKRKITDENGTDK-QGRYSKTQQIQ--CPYLDTINRHVLDFDFEKLCSVS 216
+ NK+ E + +++ K +G++S+ +++ CPYLDT+NR VLDFDFE+ CSVS
Sbjct: 505 NGNKVKGEAQEEVDDDEDDDVSKGKGKHSRHVEVRRDCPYLDTVNRQVLDFDFERFCSVS 564
Query: 217 LTRINVYACLVCGNIFR 267
L+ +NVYACLVCG F+
Sbjct: 565 LSNLNVYACLVCGKYFQ 581
Score = 33.9 bits (74), Expect = 0.094
Identities = 13/30 (43%), Positives = 22/30 (73%)
Frame = +3
Query: 423 FTPEQIKLIDTNTKMSRAIDGTMYMPGIVA 512
F+ Q+ +D N + SRA+DG+ Y+PG+V+
Sbjct: 687 FSRAQVNELDKNRQWSRALDGSDYLPGMVS 716
>At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 15 (UBP15)
[Arabidopsis thaliana] GI:11993475; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 631
Score = 38.3 bits (85), Expect = 0.004
Identities = 19/38 (50%), Positives = 21/38 (55%)
Frame = +2
Query: 482 WHNVYAWHCGLNNIKANDYCNVILQCLSQVRPLRNYFL 595
W N CGL N + + NVILQCLS RPL Y L
Sbjct: 160 WDNPELAPCGLMNCGNSCFANVILQCLSWTRPLVAYLL 197
>At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 15 (UBP15)
[Arabidopsis thaliana] GI:11993475; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 672
Score = 37.9 bits (84), Expect = 0.006
Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +2
Query: 434 TDQAYRY*HKNVTSH*WHNVYAWHCGLNNIKANDYCNVILQCLSQVRPLRNYFL-RARLC 610
TD + Y V + W CGL N + + NV+LQCLS RPL Y L R
Sbjct: 151 TDVLFPY-ESFVRYYNWDRPIMAPCGLTNCGNSCFANVVLQCLSWTRPLVAYLLERGHKR 209
Query: 611 SCTR 622
C R
Sbjct: 210 ECRR 213
>At4g22420.1 68417.m03240 expressed protein predicted protein,
Arabidopsis thaliana
Length = 184
Score = 35.1 bits (77), Expect = 0.041
Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Frame = +1
Query: 52 NKMTEEQSRKRKITDENGTDKQGRYSKTQQIQ--CPYLDTINRHVLDFD 192
N +E+ + D++ + +G++S+ +++ CPYLDT+NR V+ D
Sbjct: 98 NGEAQEEVDDEEDDDDDASKGRGKHSRHVEVRRDCPYLDTVNRQVIIID 146
>At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putative
(UBP16) similar to ubiquitin-specific protease 16
GI:11993477 [Arabidopsis thaliana]
Length = 1008
Score = 34.3 bits (75), Expect = 0.071
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 506 CGLNNIKANDYCNVILQCLSQVRPLRNYFLR 598
CGL N+ + + NV+ QCL PL YFL+
Sbjct: 542 CGLINVGNSCFANVVFQCLMFTPPLTTYFLQ 572
>At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 16 (UBP16)
[Arabidopsis thaliana] GI:11993477; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 731
Score = 33.5 bits (73), Expect = 0.12
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 509 GLNNIKANDYCNVILQCLSQVRPLRNYFLR 598
GL N+ + Y N +LQCL+ RPL +Y +R
Sbjct: 330 GLVNLGNSCYANAVLQCLAFTRPLISYLIR 359
>At5g10790.1 68418.m01254 ubiquitin-specific protease 22 (UBP22)
almost identical to ubiquitin-specific protease 22
GI:11993484 [Arabidopsis thaliana], one amino acid
difference
Length = 557
Score = 32.3 bits (70), Expect = 0.29
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 509 GLNNIKANDYCNVILQCLSQVRPLRNYFL 595
GLNN+ + + N +LQ L PLRN++L
Sbjct: 178 GLNNLGSTCFMNAVLQALVHAPPLRNFWL 206
>At5g37210.1 68418.m04468 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 625
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = +1
Query: 184 DFDFEKLCSVSLTRI---NVYACLVCGNIFREEAPTL 285
++D ++LC +T I N+Y+C+ CG + E+ L
Sbjct: 387 EYDEDRLCQACITPIYFGNLYSCMQCGFVLHEKCAEL 423
>At1g29180.1 68414.m03570 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 444
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = +1
Query: 184 DFDFEKLCSVSLTRI---NVYACLVCGNIFREEAPTL 285
D+D K C +T I N+Y+C+ C I EE L
Sbjct: 172 DYDDSKQCDACITPIYFGNLYSCIQCSFILHEECANL 208
>At5g48320.1 68418.m05969 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 977
Score = 29.5 bits (63), Expect = 2.0
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
Frame = +1
Query: 28 TLSKVYDSNKMTEEQSRKRKITDENGTDKQG--RYSKTQQIQCPYLDTINRHVLDFDFEK 201
T S V+D ++ E K + T + G R+ + I+R D++ K
Sbjct: 647 TQSNVWDGKELEGEPEEDIKKIEPFVTVRDGIIRHFSHDHHHLKLDENIDR---DYNENK 703
Query: 202 LCSVSLTRI---NVYACLVCGNIFREEAPTL 285
LC +T I N Y+C+ C I EE L
Sbjct: 704 LCQACITPIYFGNFYSCMQCDFILHEECAKL 734
>At4g13130.1 68417.m02045 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 767
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = +1
Query: 184 DFDFEKLCSVSLTRI---NVYACLVCGNIFREE 273
D+D K C +T I N+Y+C+ C I EE
Sbjct: 471 DYDENKQCQACITPIYFGNIYSCMQCNFILHEE 503
>At3g14400.1 68416.m01822 ubiquitin-specific protease 25 (UBP25)
similar to GI:11993490
Length = 661
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 509 GLNNIKANDYCNVILQCLSQVRPLRNYFL 595
GL N+ Y N +LQCL+ PL N+ L
Sbjct: 25 GLRNLGNTCYLNSVLQCLTFTPPLANFCL 53
>At4g10590.2 68417.m01733 ubiquitin carboxyl-terminal hydrolase
family protein similar to ubiquitin-specific protease
UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 910
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 509 GLNNIKANDYCNVILQCLSQVRPLRNYFLR 598
GL+N+ + N LQCL+ P+ YFL+
Sbjct: 304 GLSNLGNTCFMNSALQCLAHTPPIVEYFLQ 333
>At4g10590.1 68417.m01732 ubiquitin carboxyl-terminal hydrolase
family protein similar to ubiquitin-specific protease
UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 910
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 509 GLNNIKANDYCNVILQCLSQVRPLRNYFLR 598
GL+N+ + N LQCL+ P+ YFL+
Sbjct: 304 GLSNLGNTCFMNSALQCLAHTPPIVEYFLQ 333
>At4g10570.1 68417.m01730 ubiquitin carboxyl-terminal hydrolase
family protein similar to ubiquitin-specific protease
UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 923
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 509 GLNNIKANDYCNVILQCLSQVRPLRNYFLR 598
GL+N+ + N LQCL+ P+ YFL+
Sbjct: 305 GLSNLGNTCFMNSALQCLAHTPPIVEYFLQ 334
>At1g32850.1 68414.m04048 ubiquitin carboxyl-terminal hydrolase
family protein similar to ubiquitin-specific protease
UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 892
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 509 GLNNIKANDYCNVILQCLSQVRPLRNYFLR 598
GL N+ + N LQCL+ P+ YFL+
Sbjct: 302 GLQNLGNTCFMNSTLQCLAHTPPIVEYFLQ 331
>At4g22370.1 68417.m03233 hypothetical protein
Length = 205
Score = 28.3 bits (60), Expect = 4.7
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +1
Query: 4 RFQILHLTTLSKVYDS--NKMTEEQSRKRKITDENGTDKQGRYSKTQQIQCPYLDTINRH 177
R + H T + K + EE+S + + DE DK+ Y + I Y D +R+
Sbjct: 56 RSTLKHYTRVRKSESDWEESIDEEKSDQEESEDEENDDKKEDYRAKETILKLYTDIKDRN 115
Query: 178 VLDFDF 195
+++ D+
Sbjct: 116 IMEKDY 121
>At4g15070.1 68417.m02315 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 889
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = +1
Query: 184 DFDFEKLCSVSLTRI---NVYACLVCGNIFREEAPTL 285
D++ KLC +T I NVY+C+ C EE L
Sbjct: 664 DYNENKLCQACITPIYFGNVYSCMQCDFSLHEECAKL 700
>At4g10560.1 68417.m01729 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 703
Score = 28.3 bits (60), Expect = 4.7
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 5/91 (5%)
Frame = +1
Query: 28 TLSKVYDSNKMTEEQSRKRKITDENGTDKQG--RYSKTQQIQCPYLDTINRHVLDFDFEK 201
T V+D ++ EQ + K + G ++ Q D INR D+D K
Sbjct: 378 TQRNVWDGKELEGEQEEEIKEVEPFVKISDGIIQHFSHQHHHLRLDDNINR---DYDENK 434
Query: 202 LCSVSLTRI---NVYACLVCGNIFREEAPTL 285
C + I N Y+C+ C I EE L
Sbjct: 435 ECQACIRPIYFGNFYSCMQCEFILHEECANL 465
>At2g29650.3 68415.m03602 inorganic phosphate transporter, putative
similar to brain specific Na+-dependent inorganic
phosphate cotransporter [Rattus norvegicus] GI:507415;
contains Pfam profile PF00083: major facilitator
superfamily protein
Length = 400
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +3
Query: 414 NPTFTPEQIKLIDTNTKMSRAIDGTMYMPGIVALIISRPMITVM*FCSVCHKY 572
+PT PE+ KLI N + + LI+S+P + + C CH +
Sbjct: 176 DPTLLPEERKLIADNCASKEPVKSIPWR-----LILSKPPVWALISCHFCHNW 223
>At2g29650.2 68415.m03604 inorganic phosphate transporter, putative
similar to brain specific Na+-dependent inorganic
phosphate cotransporter [Rattus norvegicus] GI:507415;
contains Pfam profile PF00083: major facilitator
superfamily protein
Length = 398
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +3
Query: 414 NPTFTPEQIKLIDTNTKMSRAIDGTMYMPGIVALIISRPMITVM*FCSVCHKY 572
+PT PE+ KLI N + + LI+S+P + + C CH +
Sbjct: 288 DPTLLPEERKLIADNCASKEPVKSIPWR-----LILSKPPVWALISCHFCHNW 335
>At2g29650.1 68415.m03603 inorganic phosphate transporter, putative
similar to brain specific Na+-dependent inorganic
phosphate cotransporter [Rattus norvegicus] GI:507415;
contains Pfam profile PF00083: major facilitator
superfamily protein
Length = 512
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +3
Query: 414 NPTFTPEQIKLIDTNTKMSRAIDGTMYMPGIVALIISRPMITVM*FCSVCHKY 572
+PT PE+ KLI N + + LI+S+P + + C CH +
Sbjct: 288 DPTLLPEERKLIADNCASKEPVKSIPWR-----LILSKPPVWALISCHFCHNW 335
>At2g04480.1 68415.m00452 hypothetical protein
Length = 247
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 285 HAYTHSVADGHHVFLNLNTLKFYCLPDNYEVIDSSLNDIKY 407
H Y H+ +F LN + + DN ID S+ IKY
Sbjct: 200 HLYIHNKVQDFRLFDLLNEINDFTEEDNLIEIDISIGSIKY 240
>At1g62030.1 68414.m06996 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 743
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +1
Query: 184 DFDFEKLCSVSLTRI---NVYACLVCGNIFREEAPTL 285
D+D KLC + I N Y+C+ C I E+ L
Sbjct: 435 DYDVNKLCQACIMPIYSGNFYSCMQCDYILHEKCANL 471
>At3g26550.1 68416.m03314 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 681
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 205 CSVSLTRINVYACLVCGNIFREE 273
C S T + YACL CGN F ++
Sbjct: 128 CEESKTSRSYYACLECGNKFHKQ 150
>At2g42610.2 68415.m05274 expressed protein contains Pfam profile
PF04852: Protein of unknown function (DUF640)
Length = 177
Score = 27.9 bits (59), Expect = 6.2
Identities = 19/63 (30%), Positives = 25/63 (39%)
Frame = +1
Query: 118 GRYSKTQQIQCPYLDTINRHVLDFDFEKLCSVSLTRINVYACLVCGNIFREEAPTLMPTH 297
G+Y K Q+ P HVLDF L T+++V C+ G AP P
Sbjct: 38 GQYLKNQRPPVPMSHCSCNHVLDF-LRYLDQFGKTKVHVPGCMFYGQP-EPPAPCTCPLR 95
Query: 298 IQW 306
W
Sbjct: 96 QAW 98
>At2g42610.1 68415.m05273 expressed protein contains Pfam profile
PF04852: Protein of unknown function (DUF640)
Length = 177
Score = 27.9 bits (59), Expect = 6.2
Identities = 19/63 (30%), Positives = 25/63 (39%)
Frame = +1
Query: 118 GRYSKTQQIQCPYLDTINRHVLDFDFEKLCSVSLTRINVYACLVCGNIFREEAPTLMPTH 297
G+Y K Q+ P HVLDF L T+++V C+ G AP P
Sbjct: 38 GQYLKNQRPPVPMSHCSCNHVLDF-LRYLDQFGKTKVHVPGCMFYGQP-EPPAPCTCPLR 95
Query: 298 IQW 306
W
Sbjct: 96 QAW 98
>At5g45150.1 68418.m05543 ribonuclease III family protein similar to
CAF protein (RNA helicase/RNAseIII) [Arabidopsis
thaliana] GI:6102610; contains Pfam profiles PF00035:
Double-stranded RNA binding motif, PF00636 RNase3 domain
Length = 957
Score = 27.5 bits (58), Expect = 8.2
Identities = 9/32 (28%), Positives = 22/32 (68%)
Frame = +1
Query: 52 NKMTEEQSRKRKITDENGTDKQGRYSKTQQIQ 147
N +TEE ++++ + DE+ D + + +T+++Q
Sbjct: 676 NPLTEEMTQEQMVIDEDSLDVEWKLFETEELQ 707
>At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15)
almost identical to ubiquitin-specific protease 15
GI:11993475 [Arabidopsis thaliana], 7 amino acid
difference
Length = 924
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = +2
Query: 509 GLNNIKANDYCNVILQCLSQVRPLRNYFLR---ARLCS 613
GL N + Y N +LQ L+ +PL Y LR +R CS
Sbjct: 439 GLVNCGNSCYANAVLQSLTCTKPLVAYLLRRSHSRSCS 476
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,577,920
Number of Sequences: 28952
Number of extensions: 276273
Number of successful extensions: 755
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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