Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40237
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    27   3.2  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    26   5.6  
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    26   5.6  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       26   5.6  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    25   7.4  
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.8  

>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +3

Query: 330 HYIFSTKLLKLFRN*DLHSYFVNDTDI 410
           H+  STK   +FRN +L SY V+D+DI
Sbjct: 137 HHTNSTKST-IFRNANLQSYGVDDSDI 162


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/40 (25%), Positives = 18/40 (45%)
 Frame = -2

Query: 146 IAGYLVTNWNLERI*NWNTRSRAIIFIIPIHNTYSKTNVD 27
           +  Y+ T W    +  +   S  +  + PIH  Y  +N+D
Sbjct: 381 LGAYISTRWRQSHMGFFGDHSTLLFQLQPIHQVYYASNLD 420


>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 312

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -2

Query: 197 LYFSFPALFSVP*LMYQIAGYLVTNWNLERI*NWNTRSRAIIFIIPIH 54
           ++ +F  LF +  ++ +  GYL+ N N     NW TR  +     P H
Sbjct: 198 VFSAFGVLF-LGVMLVRHTGYLLLNINSHEAKNWKTRIYSFSVFFPEH 244


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 306 WRHLYYGLFIYTFCIQNG 253
           WRH++  L +  +C+ NG
Sbjct: 73  WRHVFKSLSLLEYCLHNG 90


>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1309

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 617  GRFHYEASITHFIIE**FQYHIVIAS 540
            G+FHY   I  F+ E  F Y ++++S
Sbjct: 1265 GKFHYRVQIQQFVFE-LFPYSVLLSS 1289


>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 657

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -1

Query: 621 FRPFSLRG*YNSFHY*MMISVSYCDRECLLH 529
           F P+S +G + +  Y    ++++ DRECL+H
Sbjct: 403 FDPYSEKGVHIAMRY-FDAALTHRDRECLIH 432


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,496,072
Number of Sequences: 5004
Number of extensions: 47897
Number of successful extensions: 93
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)