Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40236
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    26   4.0  
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte...    26   4.0  
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||...    25   9.3  

>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 489 DCVSGALTTELCGGRGRGRFRDH 421
           D VS A+T E+  GRG G  +DH
Sbjct: 334 DVVSRAMTVEIREGRGVGPEKDH 356


>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 18/53 (33%), Positives = 22/53 (41%)
 Frame = -3

Query: 575 IFYKHPDKEQTNLFITRTFVGCGIEATTRTVCQER*LPNCAGGAGADGLGTIS 417
           IF + P     N   T     CGI  +   +C  R L     G G  GLGT+S
Sbjct: 92  IFGRRPTVVFANAAFTLGTFWCGISRSLPELCMARAL----AGIGGGGLGTMS 140


>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 484 TVRVVASIPHPTNVR 528
           T R+ ASIPH T VR
Sbjct: 44  TFRITASIPHATQVR 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,255,796
Number of Sequences: 5004
Number of extensions: 39664
Number of successful extensions: 97
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)