Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40236
         (643 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0004 - 12260322-12261432,12261691-12261821,12262386-122624...    29   4.1  
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332...    28   5.5  
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975...    27   9.6  

>07_03_0004 -
           12260322-12261432,12261691-12261821,12262386-12262491,
           12262777-12262875,12262960-12263312,12263593-12263619
          Length = 608

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -2

Query: 561 PRQRANKSVHHTNVCRMWNRSHDPDCVSGA 472
           PR+R  +  H + VC  WN   D +   GA
Sbjct: 275 PRKRLERPAHKSEVCNAWNFDFDDNESDGA 304


>01_01_0446 +
           3321832-3322232,3322398-3322455,3322810-3323748,
           3324504-3324654,3324740-3324818,3325826-3325934
          Length = 578

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -3

Query: 542 NLFITRTFVGCG-IEATTRTVCQER*LPNCAGGAGADGLG 426
           N+F+  +   CG +    RT C +   P+ AGG G  G G
Sbjct: 168 NIFVYHSCSSCGNVNFARRTECNKCGAPSPAGGGGGGGGG 207


>09_06_0198 -
           21496692-21496991,21497111-21497258,21497341-21497578,
           21497679-21497889,21497977-21498170,21498263-21498364,
           21498525-21499879,21501193-21501494,21501600-21501750,
           21501838-21502102,21502155-21502362,21502467-21502660,
           21502749-21502850,21503481-21503680,21504010-21504846,
           21505806-21506107,21506209-21506359,21506447-21506684,
           21506764-21506971,21507078-21507271,21507322-21507462,
           21513484-21514811,21515923-21516227,21516331-21516481,
           21516570-21516807,21516881-21517088,21517197-21517366,
           21517451-21517549,21517708-21519029,21521601-21521683
          Length = 3314

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 540 ICLLFVWVFIKDEKINTRIHMKVDF 614
           +C+ F W+ IK  K N   H K+ F
Sbjct: 491 LCIFFAWLKIKGRKTNQEKHRKLIF 515


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,079,772
Number of Sequences: 37544
Number of extensions: 260875
Number of successful extensions: 802
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)