Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40236
         (643 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47014| Best HMM Match : rve (HMM E-Value=6.8e-21)                   28   5.6  
SB_18201| Best HMM Match : rve (HMM E-Value=3.6e-21)                   28   5.6  
SB_144| Best HMM Match : rve (HMM E-Value=3.6e-21)                     28   5.6  
SB_45793| Best HMM Match : rve (HMM E-Value=0.011)                     28   5.6  
SB_21960| Best HMM Match : rve (HMM E-Value=4e-23)                     28   5.6  
SB_7045| Best HMM Match : rve (HMM E-Value=3.8e-22)                    28   5.6  
SB_47179| Best HMM Match : Carboxyl_trans (HMM E-Value=0)              27   9.8  
SB_16675| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_47014| Best HMM Match : rve (HMM E-Value=6.8e-21)
          Length = 752

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 361 VYV*CRQFGSDAFTSLLPWLMVPKPSAPAPPAQ 459
           + +  ++ GSD + SLL W   P P   + PAQ
Sbjct: 679 IIIKAKKDGSDLWKSLLEWRNSPTPGTSSSPAQ 711


>SB_18201| Best HMM Match : rve (HMM E-Value=3.6e-21)
          Length = 322

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 361 VYV*CRQFGSDAFTSLLPWLMVPKPSAPAPPAQ 459
           + +  ++ GSD + SLL W   P P   + PAQ
Sbjct: 192 IIIKAKKDGSDLWKSLLEWRNSPTPGTSSSPAQ 224


>SB_144| Best HMM Match : rve (HMM E-Value=3.6e-21)
          Length = 887

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 361 VYV*CRQFGSDAFTSLLPWLMVPKPSAPAPPAQ 459
           + +  ++ GSD + SLL W   P P   + PAQ
Sbjct: 757 IIIKAKKDGSDLWKSLLEWRNSPTPGTSSSPAQ 789


>SB_45793| Best HMM Match : rve (HMM E-Value=0.011)
          Length = 254

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 361 VYV*CRQFGSDAFTSLLPWLMVPKPSAPAPPAQ 459
           + +  ++ GSD + SLL W   P P   + PAQ
Sbjct: 103 IIIKAKKDGSDLWKSLLEWRNSPTPGTSSSPAQ 135


>SB_21960| Best HMM Match : rve (HMM E-Value=4e-23)
          Length = 1109

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 361 VYV*CRQFGSDAFTSLLPWLMVPKPSAPAPPAQ 459
           + +  ++ GSD + SLL W   P P   + PAQ
Sbjct: 891 IIIKAKKDGSDLWKSLLEWRNSPTPGTSSSPAQ 923


>SB_7045| Best HMM Match : rve (HMM E-Value=3.8e-22)
          Length = 1213

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 361  VYV*CRQFGSDAFTSLLPWLMVPKPSAPAPPAQ 459
            + +  ++ GSD + SLL W   P P   + PAQ
Sbjct: 995  IIIKAKKDGSDLWKSLLEWRNSPTPGTSSSPAQ 1027


>SB_47179| Best HMM Match : Carboxyl_trans (HMM E-Value=0)
          Length = 622

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 436 SAPAPPAQFGS*RS*HTVRVVASIPH-PTNVRVMNRFVCSLSGC 564
           +AP P   FG  R  H + VV+++P+      + N+ V ++  C
Sbjct: 375 NAPIPDTNFGVFRMHHVIEVVSTVPYILLRPCISNKGVSAIGNC 418


>SB_16675| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 308

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 590 RVYFFIFYKHPDKEQTNLFITRTFVGCGIEATTRT 486
           +V+  +F K  D  + NL++  TF+G  I AT  T
Sbjct: 68  KVFIRVFTKDYDAGRKNLYMILTFLGINILATVGT 102


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,620,309
Number of Sequences: 59808
Number of extensions: 300100
Number of successful extensions: 684
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)