Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40236
         (643 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g25410.1 68418.m03014 expressed protein  contains Pfam profil...    28   4.6  
At5g21482.1 68418.m02536 cytokinin oxidase, putative (CKX5) cont...    27   8.0  

>At5g25410.1 68418.m03014 expressed protein  contains Pfam profile
           PF03080: Arabidopsis proteins of unknown function
          Length = 369

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = -3

Query: 206 IKIILKY*SFFFSQTLIIS*DYKILKIRTFKISCDVTRLTLEAHKYP 66
           I +++    F+FS  LI S D  ++ +RTFKI  +VT   +  +K P
Sbjct: 7   IALVMNVFLFWFSPALIRS-DPNMVPLRTFKIRENVTYDCINIYKQP 52


>At5g21482.1 68418.m02536 cytokinin oxidase, putative (CKX5)
           contains Pfam profile: PF01565 FAD binding domain;
           identical to cytokinin oxidase (CKX5) [Arabidopsis
           thaliana] gi|11120514|gb|AAG30908; similar to
           Swiss-Prot:Q9LTS3 cytokinin oxidase 3 precursor (CKO
           3)[Arabidopsis thaliana]
          Length = 524

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +3

Query: 489 PGRGFDSTSYKRSCDEQICLLFVWVFIKDEKINTRIHMKVDFLIG 623
           P   FD T   +SC   +  L + +  +D   N+ I  +V+ LIG
Sbjct: 296 PDHEFDPTRLPQSCGSVLYCLELGLHYRDSDSNSTIDKRVERLIG 340


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,568,119
Number of Sequences: 28952
Number of extensions: 208503
Number of successful extensions: 424
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)