Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40235
         (693 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q09F08 Cluster: Ymf77; n=1; Tetrahymena pigmentosa|Rep:...    36   1.2  
UniRef50_Q4S3K2 Cluster: Chromosome 1 SCAF14749, whole genome sh...    35   2.2  
UniRef50_Q99393 Cluster: ADIPOR-like receptor IZH4; n=2; Sacchar...    34   2.9  
UniRef50_Q9TZA2 Cluster: Putative uncharacterized protein E02H9....    34   3.8  
UniRef50_Q4J9F3 Cluster: Conserved Archaeal membrane protein; n=...    33   5.0  
UniRef50_Q8MXV9 Cluster: HrPEN-2 protein; n=1; Halocynthia roret...    33   6.6  
UniRef50_Q4GYE3 Cluster: Putative uncharacterized protein; n=1; ...    33   6.6  
UniRef50_A5K733 Cluster: Variable surface protein Vir12/24-relat...    33   6.6  
UniRef50_A3LTP5 Cluster: Predicted protein; n=1; Pichia stipitis...    33   6.6  
UniRef50_UPI0000F20136 Cluster: PREDICTED: hypothetical protein;...    33   8.8  
UniRef50_A1BE64 Cluster: Putative uncharacterized protein; n=1; ...    33   8.8  
UniRef50_Q8TRL3 Cluster: Putative uncharacterized protein; n=4; ...    33   8.8  

>UniRef50_Q09F08 Cluster: Ymf77; n=1; Tetrahymena pigmentosa|Rep:
            Ymf77 - Tetrahymena pigmentosa
          Length = 1260

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 5/126 (3%)
 Frame = -1

Query: 621  FKITFLSYKCLFTIFFFSLNYIYHSFAF-----FVKQICT*LLTRVYPCVSSLPALTIHC 457
            F+I  +    +F ++    +YI + F +     F+K I   +   +Y  + S P   ++ 
Sbjct: 816  FRIKIIKLISIFILYSNISSYILNIFIYINNNIFIKLIIYFINIFIYE-IKSFPYYILYI 874

Query: 456  CDASSSTPLSMLVFDFLSFIIHLQNVFCFVMEFVILSDKVYSPYRCNTSIFFVQECVYFI 277
                +   ++ L+ DFL FII L  +  ++ +++ L DK Y  +   TS   ++  +YF 
Sbjct: 875  ISTPNFYIINFLL-DFLIFIISLNWLLIYLRKYLNL-DKKYVAFPLVTSEIIIKYIIYFY 932

Query: 276  KFSLTF 259
             F   F
Sbjct: 933  TFYYLF 938


>UniRef50_Q4S3K2 Cluster: Chromosome 1 SCAF14749, whole genome
           shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
           Chromosome 1 SCAF14749, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 287

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 21/67 (31%), Positives = 31/67 (46%)
 Frame = -1

Query: 450 ASSSTPLSMLVFDFLSFIIHLQNVFCFVMEFVILSDKVYSPYRCNTSIFFVQECVYFIKF 271
           ++++ PL +L+  F    I L   FCF +  VI++   Y PY  +  IF       F   
Sbjct: 94  SATTLPLGILMDKFGPRPIRLMGSFCFGLSCVIMAASAYDPYVLSALIFLALSLNGFGGI 153

Query: 270 SLTFGRL 250
            LTF  L
Sbjct: 154 CLTFTSL 160


>UniRef50_Q99393 Cluster: ADIPOR-like receptor IZH4; n=2;
           Saccharomyces cerevisiae|Rep: ADIPOR-like receptor IZH4
           - Saccharomyces cerevisiae (Baker's yeast)
          Length = 312

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 33/106 (31%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
 Frame = -1

Query: 591 LFTIFFFSL-NYIYHSFAFFVKQICT*LLTRVYPCVSSLPALTIHCCDASSSTPLSMLVF 415
           L  +F F + ++IYH    FVK I        +   S L    I+   +S  T L  L +
Sbjct: 109 LLNVFVFCMVHFIYH----FVKNISLQQHLEHWQKFSYLS--NINLLISSQITILYYLFY 162

Query: 414 DFLSFI---IHLQNVFCFVMEFVILSDKVYSPYRCNTSIFFVQECV 286
           D++ F      L N    V  F IL+DK+ S  R N ++FF+   V
Sbjct: 163 DYVFFFKIFTLLMNFIGLVAYFFILTDKLISSKRFNKTVFFISVSV 208


>UniRef50_Q9TZA2 Cluster: Putative uncharacterized protein E02H9.6;
           n=2; Caenorhabditis elegans|Rep: Putative
           uncharacterized protein E02H9.6 - Caenorhabditis elegans
          Length = 460

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = -1

Query: 432 LSMLVFDFLSFIIHLQNVFCFVMEFVILSDKVYSPYRCNTSIFFVQECVYFIKFSLT 262
           L+  +F F+   I+L  +F  V+   + SD     + C TS+ FV  C+Y +K+  T
Sbjct: 76  LAYCIFVFVRISIYLVTIFSEVVFLKMGSDDAPISFLCFTSVLFVYACIY-VKYCKT 131


>UniRef50_Q4J9F3 Cluster: Conserved Archaeal membrane protein; n=1;
           Sulfolobus acidocaldarius|Rep: Conserved Archaeal
           membrane protein - Sulfolobus acidocaldarius
          Length = 548

 Score = 33.5 bits (73), Expect = 5.0
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = -1

Query: 402 FIIHLQNVFCFVMEFVILSDKVY-SPYRCNTSIFFVQECVYFIKFSLTFG 256
           +II  QN++ F+  +VIL   +Y    +  + IFF+   +YF++  + FG
Sbjct: 77  YIILTQNIWLFLFTYVILGLGIYFRKLKLFSLIFFLASMIYFLQIRVFFG 126


>UniRef50_Q8MXV9 Cluster: HrPEN-2 protein; n=1; Halocynthia
           roretzi|Rep: HrPEN-2 protein - Halocynthia roretzi (Sea
           squirt)
          Length = 1255

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 18/47 (38%), Positives = 28/47 (59%)
 Frame = -1

Query: 348 SDKVYSPYRCNTSIFFVQECVYFIKFSLTFGRL*FI*FGIHSLVTNC 208
           S ++ S  R NTS+  V+EC++F+K S+T G+       IH  V +C
Sbjct: 713 SKRLKSSLRSNTSVVHVKECIFFLK-SITVGQR-----PIHQFVLSC 753


>UniRef50_Q4GYE3 Cluster: Putative uncharacterized protein; n=1;
           Trypanosoma brucei|Rep: Putative uncharacterized protein
           - Trypanosoma brucei
          Length = 128

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
 Frame = -1

Query: 525 ICT*LLTRVYPCVSSLPALTIH-CCDASSSTPLSMLVFDFLSFIIHLQNVFCFVMEFVIL 349
           +C  L   VY C        +H CC    S P ++L F FLSFI +  +VF +   F   
Sbjct: 7   LCLCLCLCVYMCNHRPIFFFVHPCCSFHFSPPFALLRFRFLSFIFYF-SVFAY-YSFNFN 64

Query: 348 SDKVYSPY-RCNTSIFFVQECVYF 280
            + V  PY    + +FF   C  F
Sbjct: 65  FNFVVRPYFHWFSFLFFSVLCALF 88


>UniRef50_A5K733 Cluster: Variable surface protein Vir12/24-related;
           n=1; Plasmodium vivax|Rep: Variable surface protein
           Vir12/24-related - Plasmodium vivax
          Length = 443

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = -1

Query: 621 FKITFLSYKCLFTIFFFSLNY 559
           F I+F+ YKC F +FFFS+++
Sbjct: 419 FSISFVYYKCTFALFFFSIHF 439


>UniRef50_A3LTP5 Cluster: Predicted protein; n=1; Pichia
           stipitis|Rep: Predicted protein - Pichia stipitis
           (Yeast)
          Length = 486

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -1

Query: 618 KITFLSYKCLFTIFFFSLNYIYHSFAFFVKQICT 517
           K+T L     + I+FF +N++Y+S  F ++ ICT
Sbjct: 212 KLTQLPIVTRYIIYFFIVNFVYNSLYFILELICT 245


>UniRef50_UPI0000F20136 Cluster: PREDICTED: hypothetical protein;
           n=1; Danio rerio|Rep: PREDICTED: hypothetical protein -
           Danio rerio
          Length = 256

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
 Frame = -1

Query: 618 KITFLSYKCLFTIFFFSLNYIYHSFAFFVKQICT*LLTRVYPCVSSLPALT---IHCCDA 448
           +  +L + CL +I   S+       A  ++  C   ++++  C S++ A+     HC D+
Sbjct: 53  RFLYLLWPCLISILTGSVTIS----AAHIRSTCQVRISQLLNCFSAIAAVVSIPCHCLDS 108

Query: 447 SSSTPLSMLVFDFLSFIIH--LQNVFC 373
              T + +LV D L FI+   + + FC
Sbjct: 109 EGKTLILLLVCDVLIFILSVIVASTFC 135


>UniRef50_A1BE64 Cluster: Putative uncharacterized protein; n=1;
           Chlorobium phaeobacteroides DSM 266|Rep: Putative
           uncharacterized protein - Chlorobium phaeobacteroides
           (strain DSM 266)
          Length = 941

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = -1

Query: 525 ICT*LLTRVYPCVSSLPALTIHCCDASSSTPLSMLVFDF-LSFIIHLQNVFCFVMEFVIL 349
           +CT LLTR  PCV  L  L ++  +   S PLS   +D  LSFI  L      V   V+L
Sbjct: 184 LCT-LLTRFAPCVVLLDELVVYIRNFVESQPLSGGTYDSNLSFIQSLTEAAKLVPNAVVL 242

Query: 348 S 346
           +
Sbjct: 243 A 243


>UniRef50_Q8TRL3 Cluster: Putative uncharacterized protein; n=4;
           Euryarchaeota|Rep: Putative uncharacterized protein -
           Methanosarcina acetivorans
          Length = 289

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 15/54 (27%), Positives = 32/54 (59%)
 Frame = -2

Query: 416 LISFHSLFTFKMFFVL*WNL*YYPIKFIHPIDAIPVYFLYRNVFILLNLVLHLV 255
           L S H+ FT  +FF + W+L ++P+ F++ +    ++  + NV+  +N  + +V
Sbjct: 151 LQSRHTFFTASIFFSILWSLWHFPLIFVNNMYQYEIF--HENVWYAVNFFVSIV 202


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 596,659,231
Number of Sequences: 1657284
Number of extensions: 10990374
Number of successful extensions: 21992
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 21077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21965
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54545459628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)