Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40235
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    31   0.21 
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos...    30   0.36 
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    29   0.84 
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    27   3.4  
SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |...    26   4.5  
SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyc...    26   5.9  
SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   7.9  

>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 23/77 (29%), Positives = 33/77 (42%)
 Frame = -1

Query: 630 LLRFKITFLSYKCLFTIFFFSLNYIYHSFAFFVKQICT*LLTRVYPCVSSLPALTIHCCD 451
           +L F   F    C+F  F FSL+++      F+      LL RV+  +S LP L   C  
Sbjct: 152 ILHFLFFFFLCVCVFLSFLFSLSHLLSLAILFLP-----LLLRVFSTLSRLPRLFCLCLQ 206

Query: 450 ASSSTPLSMLVFDFLSF 400
                   ++ F F SF
Sbjct: 207 KKRRV---LIPFAFTSF 220



 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 600 YKCLFTIFFFSLNYIYHSFAF 538
           ++CL   FFF L ++  SF+F
Sbjct: 113 FRCLLLFFFFLLFFLSFSFSF 133


>SPBC8D2.01 |gsk31||serine/threonine protein kinase
           Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 381

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
 Frame = +2

Query: 233 PNQINYNRPNVRLNLIK*T--HSCTKNIL-VLH 322
           PN +N++ PNVR + ++    H+CTKN + +LH
Sbjct: 255 PNYVNHSLPNVRPHTLESVMPHNCTKNAMDLLH 287


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = -1

Query: 444 SSTPLSMLVFDFLSFIIHLQNVFCFVMEFVILSDKVYSPYRCNTSIFFVQECVY--FIKF 271
           S  P+S  +   L F++ L    CF M  ++  +     +  +  + F  ECV+  F+ F
Sbjct: 705 SVLPISPSLHSILRFLLLLLAFLCFAMHILLTPEATLRKWASSIYLSFRLECVFISFLIF 764

Query: 270 SL 265
           S+
Sbjct: 765 SV 766


>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = +2

Query: 230 IPNQINYNRPNVRLNLIK*THSCTKN 307
           + ++I+++ PNV++  +K T +C KN
Sbjct: 54  LKSRIDHSNPNVQIMALKLTDTCVKN 79


>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = -3

Query: 541 IFRETDLHLIVDPCLSMC 488
           +F+ET L++ V+PCL MC
Sbjct: 261 VFKETTLYVTVEPCL-MC 277


>SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 248

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 501 VYPCVSSLPALTIHCCDAS 445
           VYP +   P L I+CCD S
Sbjct: 70  VYPLLEVQPNLKIYCCDFS 88


>SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -1

Query: 492 CVSSLPALTIHCCDASSSTPLSMLVFDFLSFIIHLQNVFCFV 367
           C  S P L  HC    +     + + +F SFI  LQ   CF+
Sbjct: 105 CKKSKPHLQTHCIKRKTYCVKHLAISNFQSFI--LQRFSCFL 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,691,084
Number of Sequences: 5004
Number of extensions: 53646
Number of successful extensions: 100
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)