Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40235
         (693 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0629 + 22920206-22920291,22920430-22920527,22920657-229207...    29   2.6  
04_04_1185 - 31562061-31562519,31562962-31563026,31563384-31563420     29   3.5  
01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895,266...    28   6.1  

>06_03_0629 +
           22920206-22920291,22920430-22920527,22920657-22920796,
           22921596-22921626,22922025-22922128,22922439-22922560,
           22922651-22923050,22923245-22923268
          Length = 334

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 417 FDFLSFIIHLQNVFCFVMEFVIL 349
           FD L+F+   QNV CFV  F+++
Sbjct: 41  FDHLAFLNFAQNVVCFVWSFIMI 63


>04_04_1185 - 31562061-31562519,31562962-31563026,31563384-31563420
          Length = 186

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -1

Query: 588 FTIFFFSLNYIYHSFAFFVKQICT*LLTRVYPCVSSLPALTIHCCDASS 442
           F+    +   + H+F+ F K IC   +  +Y    +L   TI  C AS+
Sbjct: 92  FSCHLLACGLLVHAFSDFTKDICNFTVVALYGTYDTLHPETIEQCRAST 140


>01_01_0328 -
           2664412-2664535,2665388-2665465,2667784-2667895,
           2668344-2668410,2668473-2668562,2668672-2668787,
           2668999-2671924
          Length = 1170

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = -1

Query: 489 VSSLPALTIHCCDASSSTPLSMLVFDFLSFIIHLQNVFCFVMEFVILSDKVYS 331
           ++SL  L++HCC    S P S++    +SF+   Q     V + +    K+Y+
Sbjct: 601 LTSLEYLSLHCCRHLDSLPASLMRLSNISFLELEQTGIDHVPKGIAKFQKLYN 653


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,999,138
Number of Sequences: 37544
Number of extensions: 266292
Number of successful extensions: 392
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)