Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40235
         (693 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g03570.1 68416.m00360 expressed protein similar to hypothetic...    30   1.7  
At5g02340.1 68418.m00157 DC1 domain-containing protein contains ...    28   5.1  
At4g04780.1 68417.m00700 expressed protein very low similarity t...    28   6.8  
At5g65970.1 68418.m08305 seven transmembrane MLO family protein ...    27   8.9  

>At3g03570.1 68416.m00360 expressed protein similar to hypothetical
           protein GB:CAB38918 [Arabidopsis thaliana]
          Length = 607

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = +3

Query: 282 NKHIPVQKIYWYCIYRVNKLYRIILQIPLQNKKHFE 389
           N +IP+ ++YW  + + +K +  I  +P   +  +E
Sbjct: 8   NNNIPLSEVYWSLVNKADKKFSKIRDLPFYERSRYE 43


>At5g02340.1 68418.m00157 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 631

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -3

Query: 397 YSPSKCFLFCNGICNIIR*SLFT 329
           +SPSK FL CN +C +I+ S+ T
Sbjct: 212 FSPSKAFLPCN-VCGLIKESILT 233


>At4g04780.1 68417.m00700 expressed protein very low similarity to
           SP|Q13503 RNA polymerase II holoenzyme component SRB7
           (RNAPII complex component SRB7) {Homo sapiens}
          Length = 381

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +1

Query: 445 RCVAAVNCERGKRTNTWIDTGQQLSANLFHEKCERVINII 564
           RC  A+  E  +    W+D        + +EKC+RV+  I
Sbjct: 49  RCAIAMKRENEEHLFKWVDEALLDEIKMVNEKCKRVVENI 88


>At5g65970.1 68418.m08305 seven transmembrane MLO family protein /
           MLO-like protein 10 (MLO10) identical to membrane
           protein Mlo10 [Arabidopsis thaliana]
           gi|14091590|gb|AAK53803; similar to MLO protein
           SWISS-PROT:P93766, NCBI_gi:1877221 [Hordeum
           vulgare][Barley]
          Length = 569

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 455 ATHLHPHHFLCWYLISFHSLFTF 387
           AT LH  H L +++ +FH L++F
Sbjct: 156 ATGLHQLHILLFFMAAFHILYSF 178


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,113,392
Number of Sequences: 28952
Number of extensions: 245904
Number of successful extensions: 419
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)