Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40234
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar...   110   2e-25
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...   109   3e-25
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    27   2.3  
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         26   4.1  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.2  

>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 189

 Score =  110 bits (264), Expect = 2e-25
 Identities = 54/87 (62%), Positives = 65/87 (74%)
 Frame = +2

Query: 248 ACPVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRV 427
           AC +RT  S + NMI GVT+GF+YKMR VYAHFPIN   TE  +++EIRNFLGE+  R +
Sbjct: 66  AC-IRTAYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVI 124

Query: 428 KMAPGVTVVNSPKQKDELIIEGNSLED 508
           K  PGVTV  S   KDE+IIEGNSLE+
Sbjct: 125 KCLPGVTVSISSAVKDEIIIEGNSLEN 151



 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 26/65 (40%), Positives = 44/65 (67%)
 Frame = +3

Query: 60  KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGS 239
           + I  ++ + IP+G++V +K+RLVTVKGPRGVLK+N + + ++++      +K   W GS
Sbjct: 3   RDIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELKK-QGNTIKFIVWHGS 61

Query: 240 KKELA 254
           +K  A
Sbjct: 62  RKHNA 66



 Score = 46.0 bits (104), Expect = 5e-06
 Identities = 21/33 (63%), Positives = 26/33 (78%)
 Frame = +1

Query: 511 SSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTV 609
           S SAA I+Q   V+NKDIRKFLDG+YVSE+  +
Sbjct: 153 SQSAANIKQICNVRNKDIRKFLDGIYVSERGNI 185


>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score =  109 bits (262), Expect = 3e-25
 Identities = 53/87 (60%), Positives = 66/87 (75%)
 Frame = +2

Query: 248 ACPVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRV 427
           AC +R+V S + NMI GVT+GF+YKMR VYAHFPIN   TE  +++EIRNFLGE+  R +
Sbjct: 66  AC-IRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVI 124

Query: 428 KMAPGVTVVNSPKQKDELIIEGNSLED 508
           K  PGVTV  S   KDE+I+EGNSLE+
Sbjct: 125 KCLPGVTVSISSAVKDEIILEGNSLEN 151



 Score = 54.4 bits (125), Expect = 1e-08
 Identities = 25/65 (38%), Positives = 41/65 (63%)
 Frame = +3

Query: 60  KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGS 239
           + I  ++ + IP G+TV +K+R VTV GPRG LK+N +H+ ++++      +K   W GS
Sbjct: 3   RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKK-QGNTIKFIVWHGS 61

Query: 240 KKELA 254
           +K  A
Sbjct: 62  RKHNA 66



 Score = 46.0 bits (104), Expect = 5e-06
 Identities = 21/33 (63%), Positives = 26/33 (78%)
 Frame = +1

Query: 511 SSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTV 609
           S SAA I+Q   V+NKDIRKFLDG+YVSE+  +
Sbjct: 153 SQSAANIKQICNVRNKDIRKFLDGIYVSERGNI 185


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 639 YLMFLYVI*HNSCFLRYIKTIQELSDILILD 547
           Y  F++ + H S  L Y KT++E++ + I+D
Sbjct: 788 YYEFIHSL-HQSSLLPYFKTLKEIAHLFIID 817


>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -2

Query: 340 SIHSTHLVLEAFSYSFNHVLYM*TDCPHGASSFLDPNHFSTFRRRGF 200
           S  S H ++E   +  +HV++    C  G  + LDP+ F    R+ +
Sbjct: 86  SYESVHSMIERLPFCPDHVVHCAGSCIPGFFTELDPSVFEKQMRQNY 132


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 253 ASSFLDPNHFSTFRRRGFTMRMSTAKC-LKFLLRTPRG 143
           A SFL+P   STF R  F+  +S   C +   LR+P G
Sbjct: 341 AQSFLEPQTRSTFLRYLFSDEVSVKVCHVLKELRSPTG 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,736,119
Number of Sequences: 5004
Number of extensions: 56432
Number of successful extensions: 151
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)