Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40234
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044    116   1e-26
02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-17...   116   1e-26
07_03_0630 - 20097672-20097772,20097983-20102012                       29   3.2  
03_06_0712 - 35683814-35684065,35685296-35685466                       27   9.8  

>09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044
          Length = 190

 Score =  116 bits (280), Expect = 1e-26
 Identities = 51/83 (61%), Positives = 65/83 (78%)
 Frame = +2

Query: 257 VRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMA 436
           +RT  SHV+N+I GVTKG++YKMR VYAHFPIN   T  N+ IEIRNFLGEK +R+V M 
Sbjct: 69  IRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDML 128

Query: 437 PGVTVVNSPKQKDELIIEGNSLE 505
            GVT++ S K KDEL+++GN +E
Sbjct: 129 EGVTILRSEKVKDELVLDGNDIE 151



 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 32/67 (47%), Positives = 53/67 (79%), Gaps = 1/67 (1%)
 Frame = +3

Query: 57  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-NPRLLKVEKWF 233
           MK I+A++ ++IP+G+TV V +++VTV+GPRG L RNFKHL +D +++   R L+V+ WF
Sbjct: 1   MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWF 60

Query: 234 GSKKELA 254
           G+++ +A
Sbjct: 61  GTRRTMA 67



 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 25/36 (69%), Positives = 28/36 (77%)
 Frame = +1

Query: 511 SSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVLD 618
           S SAALI Q   VKNKDIRKFLDG+YVS+K T+  D
Sbjct: 154 SRSAALINQKCHVKNKDIRKFLDGIYVSDKGTITED 189


>02_01_0029 -
           176002-176137,176495-176646,177166-177577,178010-178126,
           178260-178322,178964-179167,180605-180687,182394-182516,
           182987-183328
          Length = 543

 Score =  116 bits (280), Expect = 1e-26
 Identities = 51/83 (61%), Positives = 65/83 (78%)
 Frame = +2

Query: 257 VRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMA 436
           +RT  SHV+N+I GVTKG++YKMR VYAHFPIN   T  N+ IEIRNFLGEK +R+V M 
Sbjct: 62  IRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDML 121

Query: 437 PGVTVVNSPKQKDELIIEGNSLE 505
            GVT++ S K KDEL+++GN +E
Sbjct: 122 EGVTILRSEKVKDELVLDGNDIE 144



 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 29/60 (48%), Positives = 46/60 (76%), Gaps = 3/60 (5%)
 Frame = +3

Query: 84  VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV---NPRLLKVEKWFGSKKELA 254
           ++IP G+TVHV +++VTV+GPRG L RNFKHL +D +++     R L+V+ WFG+++ +A
Sbjct: 1   MEIPSGVTVHVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEVEGVRKLQVDAWFGTRRTMA 60



 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 25/36 (69%), Positives = 28/36 (77%)
 Frame = +1

Query: 511 SSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVLD 618
           S SAALI Q   VKNKDIRKFLDG+YVS+K T+  D
Sbjct: 147 SRSAALINQKCHVKNKDIRKFLDGIYVSDKGTITED 182


>07_03_0630 - 20097672-20097772,20097983-20102012
          Length = 1376

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
 Frame = -3

Query: 579  IQELSDILILDCSRLLNESS-RARESSKELPSMIS------SSFCFGELTTVTPGAIFTL 421
            I+ L +ILI+DCS ++ +S+  + +  K+ P+ I       +    G  T    G  F +
Sbjct: 1017 IKNLKNILIIDCSTVVTDSNEESAQEDKQSPTQIDRTMHSLTHLTLGGDTMQKVGLEFVI 1076

Query: 420  LMYFSPKKLRISIIELPSVVTQ 355
                S + LR+ I++  + +T+
Sbjct: 1077 PQTPSLRNLRLDIVQGHTSITK 1098


>03_06_0712 - 35683814-35684065,35685296-35685466
          Length = 140

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +3

Query: 153 VLKRNF-KHLAVDIRMVNPRLLKVE 224
           VLKR+F +  AVD+R +NP++ K E
Sbjct: 5   VLKRHFSRKRAVDVRRINPKVPKEE 29


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,410,044
Number of Sequences: 37544
Number of extensions: 356842
Number of successful extensions: 750
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)