Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40234
(650 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23) 97 1e-20
SB_40010| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 5e-09
SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82) 29 3.3
SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_44616| Best HMM Match : rve (HMM E-Value=0.012) 28 5.7
SB_36341| Best HMM Match : DUF329 (HMM E-Value=1.7) 28 5.7
SB_37278| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_2184| Best HMM Match : AMP-binding (HMM E-Value=8.5e-06) 28 7.6
SB_46518| Best HMM Match : VWA (HMM E-Value=1.6e-07) 28 7.6
SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30) 28 7.6
>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
Length = 741
Score = 97.1 bits (231), Expect = 1e-20
Identities = 41/64 (64%), Positives = 53/64 (82%)
Frame = +2
Query: 248 ACPVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRV 427
AC V+T+ +H+ENMIKGV G++YKMRAVYAHFPIN E +++E+RNFLGEKY+RRV
Sbjct: 622 AC-VKTIITHIENMIKGVIYGYRYKMRAVYAHFPINIAIQENGTLVEVRNFLGEKYVRRV 680
Query: 428 KMAP 439
+M P
Sbjct: 681 RMRP 684
Score = 79.4 bits (187), Expect = 2e-15
Identities = 36/66 (54%), Positives = 49/66 (74%)
Frame = +3
Query: 57 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFG 236
MK I+A++ V IPD + V VKSR+VTV GPRG LKRNF+HL +++ V ++V+ WF
Sbjct: 557 MKTILASETVTIPDNVEVKVKSRVVTVTGPRGTLKRNFRHLRLELTKVGKDKVRVDVWFA 616
Query: 237 SKKELA 254
S+KELA
Sbjct: 617 SRKELA 622
>SB_40010| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 34
Score = 58.4 bits (135), Expect = 5e-09
Identities = 27/30 (90%), Positives = 29/30 (96%)
Frame = +1
Query: 523 ALIQQSTTVKNKDIRKFLDGLYVSEKTTVV 612
ALIQQST VKNKDIRKFLDG+YVSEKTT+V
Sbjct: 2 ALIQQSTKVKNKDIRKFLDGVYVSEKTTIV 31
>SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82)
Length = 883
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 45 DAPNMKQIVANQKVKIPDGLTVHVKSRLVTVKGPRG 152
+A +K++ + K K DG+ VH K+ TV+ PRG
Sbjct: 100 NAKRIKKLEEDLKKKTCDGVLVHRKAVAATVEEPRG 135
>SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 218 LQETRVYHANVNSQVFEVPFENSAGPFNCHQ 126
L TR+ + V+S EV E S P++CHQ
Sbjct: 160 LYNTRIPNVTVSSDGGEVELEISDDPYDCHQ 190
>SB_44616| Best HMM Match : rve (HMM E-Value=0.012)
Length = 1189
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = +3
Query: 87 KIPDGLTVHVKSRLVTVKGPRG---VLKRNFKHL-AVDIRMVNPRLLKV 221
K+ DGL VH+ ++ V K P+ + KR + L A+ I + +P + KV
Sbjct: 4 KLDDGLRVHIVTQYVLFKNPKKLEIIAKRQKETLEALQINLDHPHVAKV 52
>SB_36341| Best HMM Match : DUF329 (HMM E-Value=1.7)
Length = 197
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Frame = -1
Query: 209 TRVYHANVNSQVFEVP-------FENSAGPFNCHQTRFHMDRKP 99
TR YH NV VF V F S G N HQ + DR+P
Sbjct: 57 TRSYHENVVRPVFGVSDYWYRYEFAKSRGQINRHQLSWREDRQP 100
>SB_37278| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 101
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -3
Query: 570 LSDILILDCSRLLNESSRARESSKELPSMISSSFC 466
+ D I+ C R + SSRA +SS + ++ +C
Sbjct: 65 IHDAYIVTCQRSITTSSRANDSSIDKEQVLGKRYC 99
>SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1427
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +2
Query: 71 SKSESQNPRRAYGPCEIASGDS*RAPRS--SQKELQTL 178
S+ ++ R Y PC I SG++ APR +KE++ L
Sbjct: 1363 SEDDTTTGARRYRPCPIESGNTYEAPRQVVMEKEVEEL 1400
>SB_2184| Best HMM Match : AMP-binding (HMM E-Value=8.5e-06)
Length = 757
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = -3
Query: 549 DCSRLLNE--SSRARESSKELPSMISSSFCFGELTTVTPGAIFTLLMYFSPKKLRISIIE 376
D RLL + + E KELP++++ + TV G +F F PK +R ++ E
Sbjct: 138 DSLRLLKDVIQNGRPEEKKELPAIVAPYHSHRDELTVYDGLVFKGERLFIPKSMRHAMKE 197
Query: 375 L 373
+
Sbjct: 198 M 198
>SB_46518| Best HMM Match : VWA (HMM E-Value=1.6e-07)
Length = 309
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -3
Query: 495 LPSMISSSFCFGELTTVTPGAIFTLLMYFSPKKLRISIIE 376
+P I S G+L +T G I T PKKL +IE
Sbjct: 218 IPIAIGSKVNLGQLNILTAGPIITANTSGDPKKLANQVIE 257
>SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)
Length = 1152
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 114 VKSRLVTVKGPRGVLKRNFKHL 179
V++R TV PRG L+RN +HL
Sbjct: 1069 VETRSYTVSTPRGELRRNRRHL 1090
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,468,073
Number of Sequences: 59808
Number of extensions: 423097
Number of successful extensions: 1006
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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