Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40234
         (650 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    25   1.6  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    25   1.6  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    24   4.8  
DQ974164-1|ABJ52804.1|  410|Anopheles gambiae serpin 4C protein.       23   8.4  

>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 19/78 (24%), Positives = 38/78 (48%)
 Frame = -3

Query: 462 GELTTVTPGAIFTLLMYFSPKKLRISIIELPSVVTQLMGK*AYTARILYWKPLVTPLIMF 283
           GE  T++   + +L ++F    L + II   S+V  L+GK    A IL    +   +++ 
Sbjct: 272 GEKVTLSISILISLHVFFL---LVVEIIPPTSLVVPLLGKYLIFAMILVSISICVTVVVL 328

Query: 282 STCEQTVLTGQAPFWIRT 229
           +   ++  T +   W++T
Sbjct: 329 NVHFRSPQTHRMAPWVKT 346


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 19/78 (24%), Positives = 38/78 (48%)
 Frame = -3

Query: 462 GELTTVTPGAIFTLLMYFSPKKLRISIIELPSVVTQLMGK*AYTARILYWKPLVTPLIMF 283
           GE  T++   + +L ++F    L + II   S+V  L+GK    A IL    +   +++ 
Sbjct: 272 GEKVTLSISILISLHVFFL---LVVEIIPPTSLVVPLLGKYLIFAMILVSISICVTVVVL 328

Query: 282 STCEQTVLTGQAPFWIRT 229
           +   ++  T +   W++T
Sbjct: 329 NVHFRSPQTHRMAPWVKT 346


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 20/79 (25%), Positives = 36/79 (45%)
 Frame = -3

Query: 462 GELTTVTPGAIFTLLMYFSPKKLRISIIELPSVVTQLMGK*AYTARILYWKPLVTPLIMF 283
           GE  +++   + +L ++F    L   II   S+V  L+GK      IL    +   +I+ 
Sbjct: 268 GEKVSLSISILLSLTVFFL---LLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVIVL 324

Query: 282 STCEQTVLTGQAPFWIRTI 226
           +   ++  T     W+RTI
Sbjct: 325 NIHFRSPQTHTMAPWVRTI 343


>DQ974164-1|ABJ52804.1|  410|Anopheles gambiae serpin 4C protein.
          Length = 410

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 384 LRYVTSWVRNTSEG 425
           +RY+ SWV N + G
Sbjct: 84  VRYINSWVHNQTHG 97


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 685,557
Number of Sequences: 2352
Number of extensions: 14861
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 64395870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)