Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40234
(650 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006679-6|AAK84469.1| 189|Caenorhabditis elegans Ribosomal pro... 121 4e-28
Z78419-7|CAC42290.1| 1601|Caenorhabditis elegans Hypothetical pr... 29 2.2
AF159144-1|AAF80368.1| 1601|Caenorhabditis elegans RRF-1 protein. 29 2.2
Z47074-1|CAA87375.2| 851|Caenorhabditis elegans Hypothetical pr... 28 6.6
AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical ... 28 6.6
Z68317-2|CAA92690.2| 980|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical pr... 27 8.7
AL132860-13|CAB60509.1| 292|Caenorhabditis elegans Hypothetical... 27 8.7
>AC006679-6|AAK84469.1| 189|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 9 protein.
Length = 189
Score = 121 bits (292), Expect = 4e-28
Identities = 52/90 (57%), Positives = 68/90 (75%)
Frame = +2
Query: 236 IQKGACPVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKY 415
++K +RTVCSH++NMIKGVT GF+YKMR+VYAHFPIN +GN +EIRNFLGEK
Sbjct: 61 VRKELAAIRTVCSHIKNMIKGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNFLGEKI 120
Query: 416 IRRVKMAPGVTVVNSPKQKDELIIEGNSLE 505
+RRV + GV S QKDE+++EGN ++
Sbjct: 121 VRRVPLPEGVIATISTAQKDEIVVEGNDVQ 150
Score = 70.9 bits (166), Expect = 7e-13
Identities = 30/66 (45%), Positives = 46/66 (69%)
Frame = +3
Query: 57 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFG 236
MK I +N V P+G+T VK+R+V V GPRG ++++F+HL +++ + L+V KWFG
Sbjct: 1 MKLIESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEMERIGKSTLRVRKWFG 60
Query: 237 SKKELA 254
+KELA
Sbjct: 61 VRKELA 66
Score = 58.8 bits (136), Expect = 3e-09
Identities = 28/37 (75%), Positives = 31/37 (83%)
Frame = +1
Query: 511 SSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVLDD 621
S +AA IQQST VK KDIRKFLDG+YVSEKTT+V D
Sbjct: 153 SQAAARIQQSTAVKEKDIRKFLDGIYVSEKTTIVPTD 189
>Z78419-7|CAC42290.1| 1601|Caenorhabditis elegans Hypothetical
protein F26A3.8 protein.
Length = 1601
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -3
Query: 603 CFLRYIKTIQELSDILILDCSRLLNESSRARESSKELPSMI 481
C R I+EL D IL ++ +NE + R KE P I
Sbjct: 762 CHKRITSRIEELMDRQILSFAKQMNEETFCRNKLKEFPRRI 802
>AF159144-1|AAF80368.1| 1601|Caenorhabditis elegans RRF-1 protein.
Length = 1601
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -3
Query: 603 CFLRYIKTIQELSDILILDCSRLLNESSRARESSKELPSMI 481
C R I+EL D IL ++ +NE + R KE P I
Sbjct: 762 CHKRITSRIEELMDRQILSFAKQMNEETFCRNKLKEFPRRI 802
>Z47074-1|CAA87375.2| 851|Caenorhabditis elegans Hypothetical
protein K07C10.1 protein.
Length = 851
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -3
Query: 564 DILILDCSRLLNESSRAR-ESSKELPSMISSSFCFGELTTVTPGAIFTLLMYFS 406
+I+ ++ NE + R E+S S I+ CF L PG + +++YFS
Sbjct: 430 EIIAIENEEFANEKTEKRSETSTGKYSRINWK-CFTNLLLSVPGRVLVIILYFS 482
>AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical
protein D1007.15 protein.
Length = 1184
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/46 (23%), Positives = 25/46 (54%)
Frame = +2
Query: 299 VTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMA 436
++ F Y + +++ FPI C+ + I+ + +G Y+R V ++
Sbjct: 1085 LSSSFVYGLSSLWYEFPIKCLLWDAAVIVCLITQIGYSYLRGVHLS 1130
>Z68317-2|CAA92690.2| 980|Caenorhabditis elegans Hypothetical
protein T01H3.2 protein.
Length = 980
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 439 RCHLYPSDVFLTQEVTYLNN*ITLSGD-TVNGEVSIHSTHLVLEAF 305
RC L ++F + +T LNN + + GD +++ + S VL F
Sbjct: 477 RCQLMQGELFRSVNITILNNNLQIYGDNSLSKSIDTSSIKSVLPCF 522
>Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical
protein M110.4b protein.
Length = 1155
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 185 NSQVFEVPFENSAGPFNCHQTRFHMDR 105
+SQ F +PF N++GP N + R M++
Sbjct: 26 SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52
>Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical
protein M110.4a protein.
Length = 1156
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 185 NSQVFEVPFENSAGPFNCHQTRFHMDR 105
+SQ F +PF N++GP N + R M++
Sbjct: 26 SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52
>AL132860-13|CAB60509.1| 292|Caenorhabditis elegans Hypothetical
protein Y56A3A.15 protein.
Length = 292
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -3
Query: 621 VI*HNSCFLRYIKTIQELSDILILDCSR 538
++ HN +L + KT L DIL+ +CS+
Sbjct: 180 ILTHNFYWLEFFKTKVTLDDILVSNCSK 207
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,148,810
Number of Sequences: 27780
Number of extensions: 319442
Number of successful extensions: 793
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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