Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40234
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   4.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   5.9  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   7.8  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 18/79 (22%), Positives = 38/79 (48%)
 Frame = -3

Query: 462 GELTTVTPGAIFTLLMYFSPKKLRISIIELPSVVTQLMGK*AYTARILYWKPLVTPLIMF 283
           GE  T++   + +L ++F    L + II   S+V  L+GK    A IL    +   +++ 
Sbjct: 273 GEKVTLSISILISLHVFFL---LVVEIIPPTSLVVPLLGKYLIFAMILVSISICVTVVVL 329

Query: 282 STCEQTVLTGQAPFWIRTI 226
           +   ++  T +   W++ +
Sbjct: 330 NVHFRSPQTHKMAPWVKRV 348


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 18/79 (22%), Positives = 38/79 (48%)
 Frame = -3

Query: 462 GELTTVTPGAIFTLLMYFSPKKLRISIIELPSVVTQLMGK*AYTARILYWKPLVTPLIMF 283
           GE  T++   + +L ++F    L + II   S+V  L+GK    A IL    +   +++ 
Sbjct: 273 GEKVTLSISILISLHVFFL---LVVEIIPPTSLVVPLLGKYLIFAMILVSISICVTVVVL 329

Query: 282 STCEQTVLTGQAPFWIRTI 226
           +   ++  T +   W++ +
Sbjct: 330 NVHFRSPQTHKMAPWVKRV 348


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 74  KSESQNPRRAYGPCEIAS 127
           KS S +PR   GPC+  S
Sbjct: 880 KSPSPSPRPLVGPCKALS 897


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +2

Query: 287 MIKGVTKGFQYKMRAVYAH 343
           M++G+  G QY     Y H
Sbjct: 740 MLRGIASGMQYLAEMNYVH 758


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 260 RTVCSHVENMIKGV 301
           R VC  +EN I+G+
Sbjct: 477 RAVCGRIENTIQGL 490


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,817
Number of Sequences: 438
Number of extensions: 3552
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)