Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40234
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C) sim...   112   2e-25
At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) simil...   112   2e-25
At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D) ribos...   111   3e-25
At1g79330.1 68414.m09245 latex-abundant protein, putative (AMC6)...    28   4.7  
At5g02800.1 68418.m00222 protein kinase family protein contains ...    28   6.2  
At2g19500.1 68415.m02279 FAD-binding domain-containing protein /...    28   6.2  

>At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C)
           similar to RIBOSOMAL PROTEIN L9 GB:P49209 from
           [Arabidopsis thaliana]
          Length = 194

 Score =  112 bits (270), Expect = 2e-25
 Identities = 50/89 (56%), Positives = 66/89 (74%)
 Frame = +2

Query: 239 QKGACPVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYI 418
           +K +  +RT  SHV+N+I GVT+GF+YKMR VYAHFPIN         IEIRNFLGEK +
Sbjct: 67  RKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKV 126

Query: 419 RRVKMAPGVTVVNSPKQKDELIIEGNSLE 505
           R+V+M  GVT+V S K KDE++++GN +E
Sbjct: 127 RKVEMLDGVTIVRSEKVKDEIVLDGNDIE 155



 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 27/71 (38%), Positives = 49/71 (69%), Gaps = 5/71 (7%)
 Frame = +3

Query: 57  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-----NPRLLKV 221
           MK I++++ + IPD +T+ V ++++ V+GPRG L R+FKHL +D +++       + LK+
Sbjct: 1   MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60

Query: 222 EKWFGSKKELA 254
           + WFG++K  A
Sbjct: 61  DSWFGTRKTSA 71



 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 23/37 (62%), Positives = 28/37 (75%)
 Frame = +1

Query: 511 SSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVLDD 621
           S S ALI Q   VK KDIRKFLDG+YVSEK+ +V ++
Sbjct: 158 SRSCALINQKCHVKKKDIRKFLDGIYVSEKSKIVEEE 194


>At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) similar
           to RIBOSOMAL PROTEIN L9 GB:P49209 from [Arabidopsis
           thaliana]
          Length = 194

 Score =  112 bits (270), Expect = 2e-25
 Identities = 50/89 (56%), Positives = 66/89 (74%)
 Frame = +2

Query: 239 QKGACPVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYI 418
           +K +  +RT  SHV+N+I GVT+GF+YKMR VYAHFPIN         IEIRNFLGEK +
Sbjct: 67  RKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKV 126

Query: 419 RRVKMAPGVTVVNSPKQKDELIIEGNSLE 505
           R+V+M  GVT+V S K KDE++++GN +E
Sbjct: 127 RKVEMLDGVTIVRSEKVKDEIVLDGNDIE 155



 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 27/71 (38%), Positives = 49/71 (69%), Gaps = 5/71 (7%)
 Frame = +3

Query: 57  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-----NPRLLKV 221
           MK I++++ + IPD +T+ V ++++ V+GPRG L R+FKHL +D +++       + LK+
Sbjct: 1   MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60

Query: 222 EKWFGSKKELA 254
           + WFG++K  A
Sbjct: 61  DSWFGTRKTSA 71



 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 23/37 (62%), Positives = 28/37 (75%)
 Frame = +1

Query: 511 SSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVLDD 621
           S S ALI Q   VK KDIRKFLDG+YVSEK+ +V ++
Sbjct: 158 SRSCALINQKCHVKKKDIRKFLDGIYVSEKSKIVEEE 194


>At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D)
           ribosomal protein L9, cytosolic - garden pea,
           PIR2:S19978
          Length = 194

 Score =  111 bits (268), Expect = 3e-25
 Identities = 51/89 (57%), Positives = 65/89 (73%)
 Frame = +2

Query: 239 QKGACPVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYI 418
           +K +  +RT  SHV+N+I GVT+GF Y+MR VYAHFPIN      N  IEIRNFLGEK +
Sbjct: 67  RKTSASIRTALSHVDNLIAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNFLGEKKV 126

Query: 419 RRVKMAPGVTVVNSPKQKDELIIEGNSLE 505
           R+V+M  GV +V S K KDE+I+EGN +E
Sbjct: 127 RKVEMLDGVKIVRSEKVKDEIILEGNDIE 155



 Score = 66.5 bits (155), Expect = 1e-11
 Identities = 29/71 (40%), Positives = 49/71 (69%), Gaps = 5/71 (7%)
 Frame = +3

Query: 57  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-----NPRLLKV 221
           MK I++++ + IPDG+ + V ++++ V+GPRG L R+FKHL +D +++       R LK+
Sbjct: 1   MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKI 60

Query: 222 EKWFGSKKELA 254
           + WFGS+K  A
Sbjct: 61  DSWFGSRKTSA 71



 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 22/37 (59%), Positives = 27/37 (72%)
 Frame = +1

Query: 511 SSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVLDD 621
           S S ALI Q   VK KDIRKFLDG+YVSEK  + +++
Sbjct: 158 SRSCALINQKCHVKKKDIRKFLDGIYVSEKGKIAVEE 194


>At1g79330.1 68414.m09245 latex-abundant protein, putative (AMC6) /
           caspase family protein similar to latex-abundant protein
           [Hevea brasiliensis] gb:AAD13216; contains Pfam domain,
           PF00656: ICE-like protease (caspase) p20 domain
          Length = 410

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/48 (25%), Positives = 28/48 (58%)
 Frame = +3

Query: 78  QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKV 221
           +++K+ DG  VHV ++ + ++    +LK+N  +  +++  + P L  V
Sbjct: 204 KELKLEDGAKVHVVNKSLPLQTLIDILKQNTGNNDIEVGKIRPTLFNV 251


>At5g02800.1 68418.m00222 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 378

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
 Frame = -3

Query: 549 DCSRLLNESSRARESSKELPS-----MISSSFCFGELTTVT 442
           DCS   +E SRA+ S  E  S     +++ +F F EL T T
Sbjct: 30  DCSVSTSEKSRAKSSLSESKSKGSDHIVAQTFTFSELATAT 70


>At2g19500.1 68415.m02279 FAD-binding domain-containing protein /
           cytokinin oxidase family protein similar to cytokinin
           oxidase, Zea mays [SP|Q9T0N8] [gi:3441978]
          Length = 501

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = -3

Query: 492 PSMISS-SFCFGELTTVTPGAI 430
           PS+IS+ S  FG +TTVTPG +
Sbjct: 39  PSIISAASHDFGNITTVTPGGV 60


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,229,158
Number of Sequences: 28952
Number of extensions: 292425
Number of successful extensions: 713
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)