Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40233
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    29   0.80 
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   1.8  
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce...    25   7.5  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   9.9  
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa...    25   9.9  
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    25   9.9  

>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -1

Query: 354 KNTLRQQIVFFFVILEEILSRSNKIIMLYNLSLTAYKFSN 235
           +NTL+Q +  FF  ++++LS  N ++  Y      Y  S+
Sbjct: 316 ENTLQQNMAIFFEGVKDLLSSKNSLMSFYKAFRILYALSD 355


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 577  TALYVFWPQMTSRIMLLRSVCFRNLIGSR*IPFNQ 473
            T L   W +  S ++  R +CF N+I  R +P ++
Sbjct: 1549 TFLQCCWAKTLSFLLNSRDICFGNIISGRDVPVDE 1583


>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = +2

Query: 26  PNCNDTFNSNLIYTLTLRF*HDF*VCSVSHRPLLNRSYTHDIQLHSHTYNSHT*RDVSN 202
           PN ND F   L   +TL F   + +   SH P L++    DI     TY     +D S+
Sbjct: 509 PNANDFFQGYLAACITLVFFIGYKIYDRSHIPSLDKL---DITTGLKTYEYEETKDSSD 564


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 380 ETKRVVLYWYIPNINIKCVSLNLRIAYYLFILVKGNLS 493
           E K   L+W I   N+KC+ L L+        V  NLS
Sbjct: 165 EDKMTPLHWSIVGGNLKCMKLILKEGGIPCTAVTANLS 202


>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 26  PNCNDTFNSNLIYTLTLRF*HDF*VCSVSHRPLLNR 133
           PN ND F   L   +TL F   + +   SH P L++
Sbjct: 509 PNANDFFQGYLAAPVTLAFFIGYKIYDRSHIPSLDK 544


>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 594

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 122 LLNRSYTHDIQLHSHTYN 175
           L NR YT +IQ+H   YN
Sbjct: 471 LNNRGYTIEIQIHDGPYN 488


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,698,683
Number of Sequences: 5004
Number of extensions: 56069
Number of successful extensions: 98
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)