Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40233
         (669 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0160 + 14247463-14247584,14247710-14247923,14250099-142502...    32   0.48 
02_03_0287 + 17320242-17320481,17323422-17324767,17325124-17325142     29   2.5  

>11_04_0160 +
           14247463-14247584,14247710-14247923,14250099-14250215,
           14251578-14251670,14251748-14251922,14252981-14253017,
           14253842-14253875,14254212-14254481,14255768-14255872,
           14256295-14256392,14256474-14256616,14257197-14257290,
           14257378-14257487,14258018-14258172,14258252-14258332,
           14258415-14258535,14259358-14259464,14259537-14259668,
           14261105-14261258,14264094-14264211,14264344-14264517,
           14264831-14264882,14265450-14265577,14265670-14265820,
           14265904-14266242
          Length = 1107

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = -1

Query: 429 LIFILGMYQYNTTRFVSV***YKYYKNTLRQQIVFFFVILEEILSRS--NKI-IMLYNLS 259
           LI + G Y YN T F+S    Y +YK+ L   I   F  L  I   S  N + +M YN+ 
Sbjct: 795 LILVHGRYSYNRTAFLSQ---YSFYKSLLICFIQILFSFLSGIAGTSLFNSVSLMAYNVF 851

Query: 258 LTA 250
            T+
Sbjct: 852 YTS 854


>02_03_0287 + 17320242-17320481,17323422-17324767,17325124-17325142
          Length = 534

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +2

Query: 20  TIPNCNDTFNSNLIYTLTLRF*HDF*VCSVSHRPLLNRSYTHDIQLHSHTYNSHT 184
           T P     F ++ +  L  R   +    +  HRP L R YTH+ Q   H Y+S T
Sbjct: 226 TPPGLTFAFPNSEVVLLRRRRPREAFFLAALHRPTLCRQYTHE-QFDLHLYSSET 279


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,131,002
Number of Sequences: 37544
Number of extensions: 278441
Number of successful extensions: 425
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)