Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40233
         (669 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40771| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_59672| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.9  

>SB_40771| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 553

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +2

Query: 2   WLSLEKTIPNCNDTFNSNLIYTLTLRF*HDF*VCSVSHRPLLNR 133
           W  L   IP+C+DT +   ++ +T+ + H    C   H  L+ +
Sbjct: 500 WFLLRSMIPSCSDTADKATVFEMTVAYIHH---CWKHHSDLIKK 540


>SB_59672| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 198

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 116 RPLLNRSYTHDIQLHSHTYNSHT 184
           RP     YTHD  LH HT+++ T
Sbjct: 43  RPHNTTDYTHDTTLHDHTHDTIT 65


>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4865

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +1

Query: 208  FDHFQVVRLI*KFVRGQG*IIQHNNFITPAQYLLQDYKKKNDLLSK 345
            FDHFQ++R I K   G+  I+Q  +  T A Y ++ Y  K+  + K
Sbjct: 4108 FDHFQILRAIGKGAFGKVCIVQKKD--TKAMYAMK-YMNKSACIKK 4150


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,989,385
Number of Sequences: 59808
Number of extensions: 375619
Number of successful extensions: 603
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)