Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40233
         (669 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92972-3|CAB07488.1|  317|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AL132860-20|CAB60503.2|  263|Caenorhabditis elegans Hypothetical...    28   6.9  

>Z92972-3|CAB07488.1|  317|Caenorhabditis elegans Hypothetical
           protein T19C9.3 protein.
          Length = 317

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 158 VVVCHECMTCLIKVYVIQNKLKNRVKNVK 72
           +V C E  TC+   Y IQ+K   ++K+VK
Sbjct: 19  LVTCFEIPTCIYGAYCIQSKTPEKMKSVK 47


>AL132860-20|CAB60503.2|  263|Caenorhabditis elegans Hypothetical
           protein Y56A3A.22 protein.
          Length = 263

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = +2

Query: 503 QISKTH*TQQHYS*RHLGPKNIKRRDYIHCYKMQIINISK 622
           +++K H  ++ Y  RHLG +++ R++ +H     I  + +
Sbjct: 197 ELNKAHYGRRWYRYRHLGVRSVSRKNSVHATTAHIGQVQR 236


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,673,081
Number of Sequences: 27780
Number of extensions: 304602
Number of successful extensions: 514
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)