Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40232
(653 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P43332 Cluster: U1 small nuclear ribonucleoprotein A; n... 73 8e-12
UniRef50_P09012 Cluster: U1 small nuclear ribonucleoprotein A; n... 68 2e-10
UniRef50_P08579 Cluster: U2 small nuclear ribonucleoprotein B'';... 67 3e-10
UniRef50_Q1WCL9 Cluster: Small nuclear ribonucleoprotein polypep... 65 2e-09
UniRef50_Q5BXV2 Cluster: SJCHGC09182 protein; n=1; Schistosoma j... 64 4e-09
UniRef50_Q54J05 Cluster: U2 small nuclear ribonucleoprotein B; n... 61 3e-08
UniRef50_Q5DD61 Cluster: SJCHGC05726 protein; n=2; Bilateria|Rep... 57 4e-07
UniRef50_Q21323 Cluster: Rnp (Rrm rna binding domain) containing... 57 4e-07
UniRef50_A3AH19 Cluster: Putative uncharacterized protein; n=2; ... 56 6e-07
UniRef50_Q4WNG1 Cluster: U1 small nuclear ribonucleoprotein A, p... 54 3e-06
UniRef50_A1CE39 Cluster: RNA binding domain protein; n=6; Pezizo... 54 3e-06
UniRef50_Q0UXL2 Cluster: Putative uncharacterized protein; n=1; ... 52 1e-05
UniRef50_Q7LL14 Cluster: Probable U2 small nuclear ribonucleopro... 51 2e-05
UniRef50_A0DWP2 Cluster: Chromosome undetermined scaffold_67, wh... 49 9e-05
UniRef50_Q6C824 Cluster: Similar to tr|Q41499 Solanum tuberosum ... 49 1e-04
UniRef50_A1CBE1 Cluster: Small nuclear ribonucleoprotein U1a,U2b... 48 1e-04
UniRef50_Q22CK3 Cluster: U1 small nuclear ribonucleoprotein A; n... 48 2e-04
UniRef50_A7AN41 Cluster: U2 small nuclear ribonucleoprotein B', ... 48 3e-04
UniRef50_Q4P2S8 Cluster: Putative uncharacterized protein; n=1; ... 48 3e-04
UniRef50_UPI00004983FC Cluster: U1snRNP-specific protein; n=1; E... 47 3e-04
UniRef50_O74968 Cluster: U1 snRNP-associated protein Usp102; n=1... 47 5e-04
UniRef50_UPI0001509B9E Cluster: U1 small nuclear ribonucleoprote... 46 8e-04
UniRef50_Q5A4F9 Cluster: Putative uncharacterized protein USA1; ... 46 0.001
UniRef50_Q4UD23 Cluster: U1 snRNP protein, putative; n=1; Theile... 44 0.002
UniRef50_Q5KMQ5 Cluster: Putative uncharacterized protein; n=1; ... 44 0.002
UniRef50_A3LPV2 Cluster: Predicted protein; n=2; Pichia|Rep: Pre... 44 0.002
UniRef50_Q01EK0 Cluster: U2snrB small nuclear ribonucleoprotein ... 44 0.003
UniRef50_Q1JSG9 Cluster: Rnp (Rrm rna binding domain) containing... 44 0.003
UniRef50_Q6C8A0 Cluster: Similar to tr|O74968 Schizosaccharomyce... 44 0.004
UniRef50_Q7RD14 Cluster: U1 small nuclear ribonucleoprotein a; n... 43 0.006
UniRef50_Q5YES2 Cluster: Small nuclear ribonucleoprotein; n=1; B... 42 0.010
UniRef50_A7ANK4 Cluster: U2 small nuclear ribonucleoprotein B', ... 42 0.013
UniRef50_A2DS99 Cluster: Putative uncharacterized protein; n=1; ... 42 0.013
UniRef50_Q8I2G9 Cluster: Small nuclear ribonucleoprotein (SnRNP)... 41 0.023
UniRef50_Q6BWJ3 Cluster: Similar to sp|P09012 Homo sapiens U1 sm... 41 0.030
UniRef50_Q57XJ8 Cluster: U2 small nuclear ribonucleoprotein B, p... 40 0.039
UniRef50_A0DPF4 Cluster: Chromosome undetermined scaffold_59, wh... 40 0.039
UniRef50_Q6BW78 Cluster: Similar to tr|O74968 Schizosaccharomyce... 39 0.12
UniRef50_Q4N0S1 Cluster: Putative uncharacterized protein; n=1; ... 38 0.21
UniRef50_A7RRA7 Cluster: Predicted protein; n=1; Nematostella ve... 37 0.37
UniRef50_Q6CVJ3 Cluster: Kluyveromyces lactis strain NRRL Y-1140... 37 0.49
UniRef50_Q5K7D5 Cluster: RNA binding protein, putative; n=1; Fil... 36 0.64
UniRef50_Q4PGF6 Cluster: Putative uncharacterized protein; n=1; ... 36 1.1
UniRef50_Q75EQ7 Cluster: AAR022Wp; n=2; Saccharomycetaceae|Rep: ... 35 1.5
UniRef50_Q6FIQ5 Cluster: Candida glabrata strain CBS138 chromoso... 35 2.0
UniRef50_Q66IT0 Cluster: MGC84815 protein; n=1; Xenopus laevis|R... 34 2.6
UniRef50_Q014L5 Cluster: Cyclophilin-type peptidyl-prolyl cis-tr... 34 2.6
UniRef50_A5DZH8 Cluster: Putative uncharacterized protein; n=1; ... 34 3.4
UniRef50_A5DEK8 Cluster: Putative uncharacterized protein; n=1; ... 34 3.4
UniRef50_A4V6N1 Cluster: HnRNP A2/B1 protein; n=1; Dugesia japon... 33 6.0
UniRef50_Q75BY5 Cluster: ACR135Cp; n=1; Eremothecium gossypii|Re... 33 6.0
UniRef50_Q6E6F7 Cluster: U1 small ribonucleoprotein; n=1; Antono... 33 7.9
UniRef50_Q6CEQ5 Cluster: Similarities with tr|Q8ITY4 Caenorhabdi... 33 7.9
UniRef50_A3LPR6 Cluster: Predicted protein; n=3; Saccharomycetal... 33 7.9
>UniRef50_P43332 Cluster: U1 small nuclear ribonucleoprotein A;
n=32; Eumetazoa|Rep: U1 small nuclear ribonucleoprotein
A - Drosophila melanogaster (Fruit fly)
Length = 216
Score = 72.5 bits (170), Expect = 8e-12
Identities = 39/93 (41%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Frame = +3
Query: 213 KRLKKKN*RSHFMQIFTIWSNI-GYSSNENLKNAWPSICYFQGNFKCHCCFAEMQGFPFY 389
+++KK+ + IF+ + I + + LK + F+ MQGFPFY
Sbjct: 16 EKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGSASNALRTMQGFPFY 75
Query: 390 DKPMRIQYSKIDSDIIAKSKGTFQERPKRPKLP 488
DKPM+I YSK DSDI+AK KGTF+ERPK+ K P
Sbjct: 76 DKPMQIAYSKSDSDIVAKIKGTFKERPKKVKPP 108
Score = 71.3 bits (167), Expect = 2e-11
Identities = 36/53 (67%), Positives = 41/53 (77%)
Frame = +1
Query: 223 KRRIKEVTLCKFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRRCKDF 381
K +K+ FSQFGQILDIVA+KTLKMRGQAFVIFKEI SA+ ALR + F
Sbjct: 20 KEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGSASNALRTMQGF 72
Score = 39.5 bits (88), Expect = 0.069
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = +2
Query: 575 NVNAEQPPNQILFLTNLPDE 634
N EQPPNQILFLTNLP+E
Sbjct: 133 NAQTEQPPNQILFLTNLPEE 152
>UniRef50_P09012 Cluster: U1 small nuclear ribonucleoprotein A;
n=35; Euteleostomi|Rep: U1 small nuclear
ribonucleoprotein A - Homo sapiens (Human)
Length = 282
Score = 68.1 bits (159), Expect = 2e-10
Identities = 37/89 (41%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Frame = +3
Query: 213 KRLKKKN*RSHFMQIFTIWSNI-GYSSNENLKNAWPSICYFQGNFKCHCCFAEMQGFPFY 389
+++KK + IF+ + I + +LK + F+ MQGFPFY
Sbjct: 19 EKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFY 78
Query: 390 DKPMRIQYSKIDSDIIAKSKGTFQERPKR 476
DKPMRIQY+K DSDIIAK KGTF ER ++
Sbjct: 79 DKPMRIQYAKTDSDIIAKMKGTFVERDRK 107
Score = 33.5 bits (73), Expect = 4.5
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +2
Query: 584 AEQPPNQILFLTNLPDE 634
+E PPN ILFLTNLP+E
Sbjct: 202 SENPPNHILFLTNLPEE 218
>UniRef50_P08579 Cluster: U2 small nuclear ribonucleoprotein B'';
n=19; Mammalia|Rep: U2 small nuclear ribonucleoprotein
B'' - Homo sapiens (Human)
Length = 225
Score = 67.3 bits (157), Expect = 3e-10
Identities = 31/53 (58%), Positives = 40/53 (75%)
Frame = +1
Query: 223 KRRIKEVTLCKFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRRCKDF 381
K +K FSQFG ++DIVA+KT+KMRGQAFVIFKE+ S+T ALR+ + F
Sbjct: 20 KEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGF 72
Score = 60.5 bits (140), Expect = 3e-08
Identities = 24/37 (64%), Positives = 32/37 (86%)
Frame = +3
Query: 366 EMQGFPFYDKPMRIQYSKIDSDIIAKSKGTFQERPKR 476
++QGFPFY KPMRIQY+K DSDII+K +GTF ++ K+
Sbjct: 68 QLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKK 104
>UniRef50_Q1WCL9 Cluster: Small nuclear ribonucleoprotein
polypeptide A; n=2; Euteleostomi|Rep: Small nuclear
ribonucleoprotein polypeptide A - Ictalurus punctatus
(Channel catfish)
Length = 156
Score = 64.9 bits (151), Expect = 2e-09
Identities = 28/36 (77%), Positives = 32/36 (88%)
Frame = +3
Query: 369 MQGFPFYDKPMRIQYSKIDSDIIAKSKGTFQERPKR 476
MQGFPFYDKPMRIQY+K DSDIIAK KGT+ ER ++
Sbjct: 72 MQGFPFYDKPMRIQYAKQDSDIIAKMKGTYVERDRK 107
Score = 64.1 bits (149), Expect = 3e-09
Identities = 31/53 (58%), Positives = 40/53 (75%)
Frame = +1
Query: 223 KRRIKEVTLCKFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRRCKDF 381
K +K+ FSQFGQILDI+ +T+KMRGQAFVIFKE++SA+ ALR + F
Sbjct: 23 KDELKKSLYAIFSQFGQILDILVARTVKMRGQAFVIFKEVNSASNALRSMQGF 75
>UniRef50_Q5BXV2 Cluster: SJCHGC09182 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC09182 protein - Schistosoma
japonicum (Blood fluke)
Length = 239
Score = 63.7 bits (148), Expect = 4e-09
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Frame = +3
Query: 213 KRLKKKN*RSHFMQIFTIWSNI-GYSSNENLKNAWPSICYFQGNFKCHCCFAEMQGFPFY 389
+++K+ + +F + I ++ LK + F MQGFP Y
Sbjct: 67 EKIKRDELKKSLYAVFVQFGQILDIITSRTLKMRGQAFVVFDDINSASTALRSMQGFPLY 126
Query: 390 DKPMRIQYSKIDSDIIAKSKGTFQERPK 473
+KPMRI ++K+DSD+IAK KGTF +RPK
Sbjct: 127 EKPMRIHFAKVDSDVIAKRKGTFVQRPK 154
>UniRef50_Q54J05 Cluster: U2 small nuclear ribonucleoprotein B; n=1;
Dictyostelium discoideum AX4|Rep: U2 small nuclear
ribonucleoprotein B - Dictyostelium discoideum AX4
Length = 241
Score = 60.9 bits (141), Expect = 3e-08
Identities = 28/54 (51%), Positives = 41/54 (75%)
Frame = +1
Query: 223 KRRIKEVTLCKFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRRCKDFH 384
K+++ E L FS++G IL+IV K+LKMRGQAF++FK+I+SA+ ALR F+
Sbjct: 25 KKKLIEQLLLLFSKYGPILEIVGSKSLKMRGQAFIVFKDITSASNALREMNGFN 78
Score = 46.0 bits (104), Expect = 8e-04
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Frame = +3
Query: 213 KRLKKKN*RSHFMQIFTIWSNI-GYSSNENLKNAWPSICYFQGNFKCHCCFAEMQGFPFY 389
+++ KK + +F+ + I +++LK + F+ EM GF F
Sbjct: 21 EKISKKKLIEQLLLLFSKYGPILEIVGSKSLKMRGQAFIVFKDITSASNALREMNGFNFL 80
Query: 390 DKPMRIQYSKIDSDIIAKSKGTFQERPK 473
D+PM+IQY K SD ++K GT+ E+ +
Sbjct: 81 DRPMKIQYCKSKSDAVSKLDGTYMEKKR 108
>UniRef50_Q5DD61 Cluster: SJCHGC05726 protein; n=2; Bilateria|Rep:
SJCHGC05726 protein - Schistosoma japonicum (Blood
fluke)
Length = 226
Score = 56.8 bits (131), Expect = 4e-07
Identities = 25/53 (47%), Positives = 38/53 (71%)
Frame = +1
Query: 223 KRRIKEVTLCKFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRRCKDF 381
K +K+ F Q G+++DI+AMKT+KMRGQAF+I+++I+ AT A R + F
Sbjct: 20 KNDLKKALYYIFGQHGRLIDIIAMKTMKMRGQAFIIYQDIACATQAYRSLQGF 72
Score = 35.1 bits (77), Expect = 1.5
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 360 FAEMQGFPFYDKPMRIQYSKIDSDIIAKSKGTFQERPKR 476
+ +QGF + +PMR+ Y+K DS I KG E KR
Sbjct: 66 YRSLQGFQLFQRPMRVTYAKKDSLQIISLKGVSAEVQKR 104
>UniRef50_Q21323 Cluster: Rnp (Rrm rna binding domain) containing
protein 3; n=7; Bilateria|Rep: Rnp (Rrm rna binding
domain) containing protein 3 - Caenorhabditis elegans
Length = 217
Score = 56.8 bits (131), Expect = 4e-07
Identities = 22/36 (61%), Positives = 32/36 (88%)
Frame = +3
Query: 369 MQGFPFYDKPMRIQYSKIDSDIIAKSKGTFQERPKR 476
+QGFPFY KPMRIQY++ DSD+I+++KGTF E+ ++
Sbjct: 70 LQGFPFYGKPMRIQYAREDSDVISRAKGTFVEKRQK 105
Score = 50.8 bits (116), Expect = 3e-05
Identities = 23/53 (43%), Positives = 36/53 (67%)
Frame = +1
Query: 223 KRRIKEVTLCKFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRRCKDF 381
K +K F+QFG+I+ +++ + KMRGQA ++FKE+SSA+ ALR + F
Sbjct: 21 KDELKRSLHMVFTQFGEIIQLMSFRKEKMRGQAHIVFKEVSSASNALRALQGF 73
>UniRef50_A3AH19 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. japonica (Rice)
Length = 267
Score = 56.4 bits (130), Expect = 6e-07
Identities = 26/53 (49%), Positives = 38/53 (71%)
Frame = +1
Query: 223 KRRIKEVTLCKFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRRCKDF 381
K +K SQ+G+ILD+VA+KT K+RGQA+V+F EI++AT A R ++F
Sbjct: 23 KEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFSEITAATNAFRGLQEF 75
Score = 39.1 bits (87), Expect = 0.091
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +3
Query: 360 FAEMQGFPFYDKPMRIQYSKIDSDIIAKSKGTFQERPKRPK 482
F +Q F FY K MR+QY+K SD +A G+ + KR K
Sbjct: 69 FRGLQEFDFYGKRMRVQYAKTRSDCLATEDGSTAPKEKRKK 109
>UniRef50_Q4WNG1 Cluster: U1 small nuclear ribonucleoprotein A,
putative; n=8; Eurotiomycetidae|Rep: U1 small nuclear
ribonucleoprotein A, putative - Aspergillus fumigatus
(Sartorya fumigata)
Length = 294
Score = 54.0 bits (124), Expect = 3e-06
Identities = 22/42 (52%), Positives = 33/42 (78%)
Frame = +1
Query: 256 FSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRRCKDF 381
FS +G +LD+VAMKT KMRGQA ++FK++ ++T A+R + F
Sbjct: 129 FSTYGTVLDVVAMKTEKMRGQAHIVFKDVQASTQAMRALQGF 170
>UniRef50_A1CE39 Cluster: RNA binding domain protein; n=6;
Pezizomycotina|Rep: RNA binding domain protein -
Aspergillus clavatus
Length = 194
Score = 54.0 bits (124), Expect = 3e-06
Identities = 22/42 (52%), Positives = 33/42 (78%)
Frame = +1
Query: 256 FSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRRCKDF 381
FS +G +LD+VAMKT KMRGQA ++FK++ ++T A+R + F
Sbjct: 48 FSTYGTVLDVVAMKTEKMRGQAHIVFKDVQASTQAMRALQGF 89
Score = 38.3 bits (85), Expect = 0.16
Identities = 15/30 (50%), Positives = 23/30 (76%)
Frame = +3
Query: 369 MQGFPFYDKPMRIQYSKIDSDIIAKSKGTF 458
+QGF F+ K M+I Y+K SD+IA+ +GT+
Sbjct: 86 LQGFDFFGKEMKIVYAKGSSDVIARLRGTY 115
>UniRef50_Q0UXL2 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 177
Score = 52.0 bits (119), Expect = 1e-05
Identities = 22/53 (41%), Positives = 36/53 (67%)
Frame = +1
Query: 223 KRRIKEVTLCKFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRRCKDF 381
K +K F+ +G +LD+VA+KT KMRGQA V+F+++ ++T A+R + F
Sbjct: 35 KEDLKRSLYMLFATYGVVLDVVALKTAKMRGQAHVVFRDLDASTQAMRALQGF 87
Score = 39.1 bits (87), Expect = 0.091
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +3
Query: 369 MQGFPFYDKPMRIQYSKIDSDIIAKSKGTFQ-ERPKRPKLP 488
+QGF F+ K M+I Y+K SD IAK GT++ P+R P
Sbjct: 84 LQGFTFFGKDMQIAYAKTKSDTIAKLDGTYKMPEPEREAEP 124
>UniRef50_Q7LL14 Cluster: Probable U2 small nuclear
ribonucleoprotein B''; n=1; Schizosaccharomyces
pombe|Rep: Probable U2 small nuclear ribonucleoprotein
B'' - Schizosaccharomyces pombe (Fission yeast)
Length = 111
Score = 51.2 bits (117), Expect = 2e-05
Identities = 23/53 (43%), Positives = 36/53 (67%)
Frame = +1
Query: 223 KRRIKEVTLCKFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRRCKDF 381
K ++ FS +G ++DIVA+KT KMRGQA V+F + S+A +A++ K+F
Sbjct: 17 KNDLRTALYMLFSTYGTVVDIVALKTPKMRGQAHVVFFDPSAAAIAMKALKNF 69
>UniRef50_A0DWP2 Cluster: Chromosome undetermined scaffold_67, whole
genome shotgun sequence; n=4; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_67,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 228
Score = 49.2 bits (112), Expect = 9e-05
Identities = 23/43 (53%), Positives = 31/43 (72%)
Frame = +1
Query: 232 IKEVTLCKFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVA 360
+K V FSQFG++L IV KT K+RGQAF++F+ I+ AT A
Sbjct: 36 LKFVLYILFSQFGEVLQIVMKKTQKLRGQAFIVFQNITYATNA 78
>UniRef50_Q6C824 Cluster: Similar to tr|Q41499 Solanum tuberosum
Spliceosomal protein; n=1; Yarrowia lipolytica|Rep:
Similar to tr|Q41499 Solanum tuberosum Spliceosomal
protein - Yarrowia lipolytica (Candida lipolytica)
Length = 146
Score = 48.8 bits (111), Expect = 1e-04
Identities = 23/47 (48%), Positives = 31/47 (65%)
Frame = +1
Query: 223 KRRIKEVTLCKFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVAL 363
K +K +FS +G ILDIVAMK +MRGQA V+F +I ++ AL
Sbjct: 44 KSDLKRYLYMRFSSYGHILDIVAMKNERMRGQAHVVFNDIDASISAL 90
>UniRef50_A1CBE1 Cluster: Small nuclear ribonucleoprotein U1a,U2b;
n=20; Pezizomycotina|Rep: Small nuclear ribonucleoprotein
U1a,U2b - Aspergillus clavatus
Length = 1390
Score = 48.4 bits (110), Expect = 1e-04
Identities = 22/51 (43%), Positives = 33/51 (64%)
Frame = +1
Query: 229 RIKEVTLCKFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRRCKDF 381
++KE FS++G IL+IVA LK +GQAF++F ++ SAT A+ F
Sbjct: 1169 QLKEALAEIFSEYGNILEIVAKTNLKAKGQAFIVFDDVESATRAIDEVNGF 1219
Score = 36.7 bits (81), Expect = 0.49
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Frame = +3
Query: 189 PFISIISMK-RLKKKN*RSHFMQIFTIWSNI-GYSSNENLKNAWPSICYFQGNFKCHCCF 362
PF + +++ R+K + +IF+ + NI + NLK + F
Sbjct: 1154 PFPKVRNLEERIKVDQLKEALAEIFSEYGNILEIVAKTNLKAKGQAFIVFDDVESATRAI 1213
Query: 363 AEMQGFPFYDKPMRIQYSKIDSDIIAKSKGTFQE 464
E+ GF +DKPM + Y+K SD +G +E
Sbjct: 1214 DEVNGFDLFDKPMVLDYAKTKSDATVLREGGSEE 1247
>UniRef50_Q22CK3 Cluster: U1 small nuclear ribonucleoprotein A; n=1;
Tetrahymena thermophila SB210|Rep: U1 small nuclear
ribonucleoprotein A - Tetrahymena thermophila SB210
Length = 270
Score = 48.0 bits (109), Expect = 2e-04
Identities = 21/42 (50%), Positives = 31/42 (73%)
Frame = +1
Query: 256 FSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRRCKDF 381
F QFG+ILDI+ K+ +RGQA++IFK+I++AT A + F
Sbjct: 77 FQQFGEILDIILKKSNTLRGQAWIIFKDITAATNAKKNLNGF 118
>UniRef50_A7AN41 Cluster: U2 small nuclear ribonucleoprotein B',
putative; n=1; Babesia bovis|Rep: U2 small nuclear
ribonucleoprotein B', putative - Babesia bovis
Length = 285
Score = 47.6 bits (108), Expect = 3e-04
Identities = 23/50 (46%), Positives = 32/50 (64%)
Frame = +1
Query: 232 IKEVTLCKFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRRCKDF 381
+K L F +FG+ILDIVA+ + +GQAF+IF + SAT AL + F
Sbjct: 47 LKAELLKMFGRFGKILDIVALTSFWRKGQAFIIFDNVESATNALHEMQGF 96
Score = 46.4 bits (105), Expect = 6e-04
Identities = 21/41 (51%), Positives = 28/41 (68%)
Frame = +3
Query: 366 EMQGFPFYDKPMRIQYSKIDSDIIAKSKGTFQERPKRPKLP 488
EMQGF M+I Y++ SDIIAK +GT++ RP+ PK P
Sbjct: 92 EMQGFVMDGHAMQINYAREKSDIIAKGQGTYRPRPEGPKKP 132
>UniRef50_Q4P2S8 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 303
Score = 47.6 bits (108), Expect = 3e-04
Identities = 20/50 (40%), Positives = 34/50 (68%)
Frame = +1
Query: 232 IKEVTLCKFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRRCKDF 381
+++ L FS +G++LD+VA + MRGQAFV+F+ +S ++ A R + F
Sbjct: 89 LRQQLLALFSTYGRVLDVVATRAPSMRGQAFVVFESVSFSSAAKRGLEGF 138
>UniRef50_UPI00004983FC Cluster: U1snRNP-specific protein; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: U1snRNP-specific
protein - Entamoeba histolytica HM-1:IMSS
Length = 232
Score = 47.2 bits (107), Expect = 3e-04
Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 5/107 (4%)
Frame = +3
Query: 177 DPTIPFISIISMKRL----KKKN*RSHFMQIFTIWSNI-GYSSNENLKNAWPSICYFQGN 341
DPTIP + + L K R +F + N+ ++LK + +
Sbjct: 14 DPTIPVSCTLYINNLDQSIKPNRIRDSLNTVFGAYGNVLQVCVRKSLKMRGQAFVIYDTK 73
Query: 342 FKCHCCFAEMQGFPFYDKPMRIQYSKIDSDIIAKSKGTFQERPKRPK 482
+Q +D+PM I YSK++SDII K +G R ++PK
Sbjct: 74 ESAQFAMESLQNHELFDRPMHINYSKVESDIIVKKQGKEITRERKPK 120
>UniRef50_O74968 Cluster: U1 snRNP-associated protein Usp102; n=1;
Schizosaccharomyces pombe|Rep: U1 snRNP-associated
protein Usp102 - Schizosaccharomyces pombe (Fission
yeast)
Length = 249
Score = 46.8 bits (106), Expect = 5e-04
Identities = 19/45 (42%), Positives = 32/45 (71%)
Frame = +1
Query: 232 IKEVTLCKFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALR 366
+K + F +G+++D+ A KTL+MRGQAFV+F + +A+ AL+
Sbjct: 42 LKRILEHLFGSYGKVIDVQARKTLRMRGQAFVVFDNLENASRALK 86
Score = 39.5 bits (88), Expect = 0.069
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = +3
Query: 366 EMQGFPFYDKPMRIQYSKIDSDIIAK 443
++QG+P Y KPM IQYSK SDII +
Sbjct: 87 DLQGYPLYGKPMMIQYSKSKSDIIVQ 112
>UniRef50_UPI0001509B9E Cluster: U1 small nuclear ribonucleoprotein
A; n=1; Tetrahymena thermophila SB210|Rep: U1 small
nuclear ribonucleoprotein A - Tetrahymena thermophila
SB210
Length = 247
Score = 46.0 bits (104), Expect = 8e-04
Identities = 20/44 (45%), Positives = 32/44 (72%)
Frame = +1
Query: 232 IKEVTLCKFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVAL 363
+K+ FS++G IL+I A K ++MRGQAFV+F++I+ A A+
Sbjct: 48 LKQELFKLFSEYGSILEIKAKKNIRMRGQAFVVFEQIACAQKAI 91
>UniRef50_Q5A4F9 Cluster: Putative uncharacterized protein USA1;
n=1; Candida albicans|Rep: Putative uncharacterized
protein USA1 - Candida albicans (Yeast)
Length = 204
Score = 45.6 bits (103), Expect = 0.001
Identities = 21/36 (58%), Positives = 29/36 (80%)
Frame = +1
Query: 256 FSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVAL 363
F+ G+IL I A+KTLK++GQAF+ F++I SAT AL
Sbjct: 30 FNVCGKILQISALKTLKLKGQAFITFEDIPSATKAL 65
>UniRef50_Q4UD23 Cluster: U1 snRNP protein, putative; n=1; Theileria
annulata|Rep: U1 snRNP protein, putative - Theileria
annulata
Length = 346
Score = 44.4 bits (100), Expect = 0.002
Identities = 19/41 (46%), Positives = 27/41 (65%)
Frame = +3
Query: 366 EMQGFPFYDKPMRIQYSKIDSDIIAKSKGTFQERPKRPKLP 488
E+QGF Y ++I Y+ SDI++ +GTF +RPK PK P
Sbjct: 111 ELQGFKIYGHTLQINYALEKSDIVSIPEGTFVQRPKGPKKP 151
Score = 43.6 bits (98), Expect = 0.004
Identities = 18/42 (42%), Positives = 29/42 (69%)
Frame = +1
Query: 256 FSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRRCKDF 381
F ++G+IL IVAMK+ RGQA+++F + S+T A+ + F
Sbjct: 74 FGKYGKILQIVAMKSFWRRGQAWIVFDNVESSTQAMNELQGF 115
>UniRef50_Q5KMQ5 Cluster: Putative uncharacterized protein; n=1;
Filobasidiella neoformans|Rep: Putative uncharacterized
protein - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 282
Score = 44.4 bits (100), Expect = 0.002
Identities = 21/48 (43%), Positives = 32/48 (66%)
Frame = +1
Query: 223 KRRIKEVTLCKFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALR 366
K +++ FS +G+++D+VA K RGQAFV+F+E +AT ALR
Sbjct: 40 KPELRQQLYALFSPYGRVIDVVAKKHDGGRGQAFVVFEEQVAATAALR 87
>UniRef50_A3LPV2 Cluster: Predicted protein; n=2; Pichia|Rep:
Predicted protein - Pichia stipitis (Yeast)
Length = 220
Score = 44.4 bits (100), Expect = 0.002
Identities = 21/48 (43%), Positives = 32/48 (66%)
Frame = +1
Query: 256 FSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRRCKDFHSMINQ 399
F++FG I+ I A K LKM+GQAF+ F+ SA AL + ++ H + N+
Sbjct: 33 FNKFGTIIQITAHKNLKMKGQAFITFETAESAAKALVKLQN-HQLFNK 79
>UniRef50_Q01EK0 Cluster: U2snrB small nuclear ribonucleoprotein
U2B, putative; n=2; Ostreococcus|Rep: U2snrB small
nuclear ribonucleoprotein U2B, putative - Ostreococcus
tauri
Length = 221
Score = 44.0 bits (99), Expect = 0.003
Identities = 19/53 (35%), Positives = 33/53 (62%)
Frame = +1
Query: 223 KRRIKEVTLCKFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRRCKDF 381
K+ ++ FS FG+ILDIVA +T ++RGQA++++ + A A ++F
Sbjct: 23 KQELRMALYSVFSSFGKILDIVAARTYRLRGQAWIVYDTMDEAQRAFEGLQNF 75
Score = 40.7 bits (91), Expect = 0.030
Identities = 14/31 (45%), Positives = 23/31 (74%)
Frame = +3
Query: 360 FAEMQGFPFYDKPMRIQYSKIDSDIIAKSKG 452
F +Q FPFYDKP++I ++ + SD+I + +G
Sbjct: 69 FEGLQNFPFYDKPLKIAFANLSSDVILRREG 99
>UniRef50_Q1JSG9 Cluster: Rnp (Rrm rna binding domain) containing
protein, putative; n=1; Toxoplasma gondii|Rep: Rnp (Rrm
rna binding domain) containing protein, putative -
Toxoplasma gondii
Length = 233
Score = 44.0 bits (99), Expect = 0.003
Identities = 23/44 (52%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Frame = +1
Query: 256 FSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRRC--KDF 381
FS +G +L++V T MRGQAFV+F ++ SAT ALR KDF
Sbjct: 60 FSAYGLVLEVVVRGT-NMRGQAFVVFADLGSATAALRAAQGKDF 102
Score = 36.3 bits (80), Expect = 0.64
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +3
Query: 372 QGFPFYDKPMRIQYSKIDSDIIAKSKGTFQERPKRPKLP 488
QG F KP+R+QY+K SD I K F +P++P P
Sbjct: 98 QGKDFLGKPLRLQYAKTKSDAILKLNDQF--KPRKPNAP 134
>UniRef50_Q6C8A0 Cluster: Similar to tr|O74968 Schizosaccharomyces
pombe Small nuclear ribonucleoprotein; n=1; Yarrowia
lipolytica|Rep: Similar to tr|O74968 Schizosaccharomyces
pombe Small nuclear ribonucleoprotein - Yarrowia
lipolytica (Candida lipolytica)
Length = 226
Score = 43.6 bits (98), Expect = 0.004
Identities = 22/47 (46%), Positives = 32/47 (68%)
Frame = +1
Query: 223 KRRIKEVTLCKFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVAL 363
K +KE+ CK ++G +LD+VA L++RGQAFV+F I SA A+
Sbjct: 25 KTTLKEI--CK--EYGDVLDVVAHGNLRLRGQAFVVFDSIDSAESAI 67
>UniRef50_Q7RD14 Cluster: U1 small nuclear ribonucleoprotein a; n=7;
Plasmodium|Rep: U1 small nuclear ribonucleoprotein a -
Plasmodium yoelii yoelii
Length = 508
Score = 43.2 bits (97), Expect = 0.006
Identities = 20/40 (50%), Positives = 24/40 (60%)
Frame = +3
Query: 369 MQGFPFYDKPMRIQYSKIDSDIIAKSKGTFQERPKRPKLP 488
+QGF + K M+I YS SD+ K GTF ER K PK P
Sbjct: 249 LQGFVLFGKIMQINYSHNKSDVHTKRNGTFVERSKEPKKP 288
Score = 40.7 bits (91), Expect = 0.030
Identities = 20/56 (35%), Positives = 35/56 (62%)
Frame = +1
Query: 214 KD*KRRIKEVTLCKFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRRCKDF 381
+D K+ +K + F+Q+G I DI+ MK+ +GQA++++ I S+T AL + F
Sbjct: 201 EDMKKSLKNI----FNQYGLIEDIIVMKSFWRKGQAWIVYDTIESSTKALNALQGF 252
>UniRef50_Q5YES2 Cluster: Small nuclear ribonucleoprotein; n=1;
Bigelowiella natans|Rep: Small nuclear ribonucleoprotein
- Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 227
Score = 42.3 bits (95), Expect = 0.010
Identities = 18/37 (48%), Positives = 27/37 (72%)
Frame = +1
Query: 256 FSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALR 366
FSQFG IL++ A K RGQA+++F ++S AT ++R
Sbjct: 35 FSQFGNILEVFASKKGNKRGQAWIVFDDLSGATKSVR 71
Score = 37.9 bits (84), Expect = 0.21
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +3
Query: 369 MQGFPFYDKPMRIQYSKIDSDIIAKSKGTFQERPKR 476
MQ F+ K MR+ Y+K SDII+K G++ R KR
Sbjct: 73 MQNVDFFGKKMRLSYAKEKSDIISKRDGSYVPREKR 108
>UniRef50_A7ANK4 Cluster: U2 small nuclear ribonucleoprotein B',
putative; n=3; Piroplasmida|Rep: U2 small nuclear
ribonucleoprotein B', putative - Babesia bovis
Length = 213
Score = 41.9 bits (94), Expect = 0.013
Identities = 19/34 (55%), Positives = 26/34 (76%)
Frame = +1
Query: 265 FGQILDIVAMKTLKMRGQAFVIFKEISSATVALR 366
+G+I+DI A +T K+RGQAFV F EI+SA A +
Sbjct: 43 YGEIVDISARRTQKLRGQAFVSFSEIASAISAFK 76
>UniRef50_A2DS99 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 238
Score = 41.9 bits (94), Expect = 0.013
Identities = 20/37 (54%), Positives = 26/37 (70%)
Frame = +1
Query: 256 FSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALR 366
FS +GQI+DI A K +K RGQA+V ++ I SA A R
Sbjct: 32 FSPYGQIIDISASKAIKKRGQAWVTYQNIESAINAKR 68
>UniRef50_Q8I2G9 Cluster: Small nuclear ribonucleoprotein (SnRNP),
putative; n=6; Plasmodium|Rep: Small nuclear
ribonucleoprotein (SnRNP), putative - Plasmodium
falciparum (isolate 3D7)
Length = 193
Score = 41.1 bits (92), Expect = 0.023
Identities = 18/40 (45%), Positives = 27/40 (67%)
Frame = +1
Query: 256 FSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRRCK 375
F +G I+DI K+ K RGQAF++F I+S+T+A + K
Sbjct: 34 FCPYGNIIDINIKKSNKGRGQAFIVFNNIASSTLAYKNLK 73
>UniRef50_Q6BWJ3 Cluster: Similar to sp|P09012 Homo sapiens U1 small
nuclear ribonucleoprotein A; n=1; Debaryomyces
hansenii|Rep: Similar to sp|P09012 Homo sapiens U1 small
nuclear ribonucleoprotein A - Debaryomyces hansenii
(Yeast) (Torulaspora hansenii)
Length = 116
Score = 40.7 bits (91), Expect = 0.030
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = +1
Query: 256 FSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALR--RCKDFHSMINQ*EFSIQKLIV 429
FS +G I+DIV KMRGQA +IF + AT A++ + K F E+S++K +
Sbjct: 47 FSTYGDIIDIVMKAQGKMRGQAHIIFANVMHATNAMKSLQGKPFFEKDLHIEYSLKKSKI 106
Query: 430 I 432
I
Sbjct: 107 I 107
>UniRef50_Q57XJ8 Cluster: U2 small nuclear ribonucleoprotein B,
putative; n=5; Trypanosomatidae|Rep: U2 small nuclear
ribonucleoprotein B, putative - Trypanosoma brucei
Length = 117
Score = 40.3 bits (90), Expect = 0.039
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Frame = +1
Query: 259 SQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRRC--KDFHSMINQ 399
+QFG ++D++ K+ M GQAFV+F ++++AT A R + F+ I Q
Sbjct: 31 TQFGPVIDVLYCKSKSMYGQAFVVFTDVATATNARRELHERQFYGRIIQ 79
>UniRef50_A0DPF4 Cluster: Chromosome undetermined scaffold_59, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_59,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 275
Score = 40.3 bits (90), Expect = 0.039
Identities = 17/43 (39%), Positives = 28/43 (65%)
Frame = +1
Query: 232 IKEVTLCKFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVA 360
+++ FSQ G++LDI+ K + MRGQAF++ ++ SA A
Sbjct: 64 MRQTLYALFSQSGKVLDIIVKKNILMRGQAFILMEDEESAIQA 106
>UniRef50_Q6BW78 Cluster: Similar to tr|O74968 Schizosaccharomyces
pombe Small nuclear ribonucleoprotein; n=1; Debaryomyces
hansenii|Rep: Similar to tr|O74968 Schizosaccharomyces
pombe Small nuclear ribonucleoprotein - Debaryomyces
hansenii (Yeast) (Torulaspora hansenii)
Length = 252
Score = 38.7 bits (86), Expect = 0.12
Identities = 16/36 (44%), Positives = 26/36 (72%)
Frame = +1
Query: 256 FSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVAL 363
F ++G+I+ I A K LKM+GQAFV F+ +++ A+
Sbjct: 68 FQKYGKIIQITAHKNLKMKGQAFVTFENKTASEAAI 103
>UniRef50_Q4N0S1 Cluster: Putative uncharacterized protein; n=1;
Theileria parva|Rep: Putative uncharacterized protein -
Theileria parva
Length = 288
Score = 37.9 bits (84), Expect = 0.21
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +3
Query: 399 MRIQYSKIDSDIIAKSKGTFQERPKRPKLP 488
MRI Y+ SD+++K+ GTF RPK PK P
Sbjct: 52 MRINYALEKSDVVSKADGTFVPRPKGPKKP 81
>UniRef50_A7RRA7 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 409
Score = 37.1 bits (82), Expect = 0.37
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Frame = +1
Query: 226 RRIKEVTLCK-FSQFGQILDIVAMK---TLKMRGQAFVIFKEISSATVALRRCKDFHSMI 393
R K VTL + FS FG+I + +K T RG AF+ F E SA+ A+R CK H +
Sbjct: 71 RDTKPVTLAEYFSVFGEIEGLRIVKDHETGISRGFAFITFTEPESASKAIRWCKHHHPQL 130
Query: 394 NQ*EFSI 414
+ + +I
Sbjct: 131 DGRQITI 137
>UniRef50_Q6CVJ3 Cluster: Kluyveromyces lactis strain NRRL Y-1140
chromosome B of strain NRRL Y- 1140 of Kluyveromyces
lactis; n=1; Kluyveromyces lactis|Rep: Kluyveromyces
lactis strain NRRL Y-1140 chromosome B of strain NRRL Y-
1140 of Kluyveromyces lactis - Kluyveromyces lactis
(Yeast) (Candida sphaerica)
Length = 114
Score = 36.7 bits (81), Expect = 0.49
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +1
Query: 232 IKEVTLCKFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRRCKD 378
++E F+ +G+++ + T K RGQAF+ FK + A +AL KD
Sbjct: 48 VRESLYMLFATYGEVIKV--SMTPKQRGQAFITFKSVDEANLALLSLKD 94
>UniRef50_Q5K7D5 Cluster: RNA binding protein, putative; n=1;
Filobasidiella neoformans|Rep: RNA binding protein,
putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 285
Score = 36.3 bits (80), Expect = 0.64
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +1
Query: 232 IKEVTLCKFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRRCKDF 381
+KE F + + I+A ++MRGQAFV F +I SA A + +F
Sbjct: 75 MKETLYNLFKPYRPLQPIIAHHNIRMRGQAFVSFSDIESANEARKDVNEF 124
>UniRef50_Q4PGF6 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 314
Score = 35.5 bits (78), Expect = 1.1
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Frame = +1
Query: 256 FSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRRCKDF--HSMINQ*EFSIQKLIV 429
FS + +L + A L+MRGQAFV ++ +A A R F + + F+ K
Sbjct: 75 FSNYATVLSVTAHTNLRMRGQAFVSLDDVHAADKARREAHLFPLYGKAMKISFAKSKSDA 134
Query: 430 I**QKVKEHFKNDLNVQSYLKVLMMGKKEKQR 525
+ QK+K+ ++ + K + K+K R
Sbjct: 135 VVLQKLKDEGGHESEMFKQHKEQRLQHKKKAR 166
>UniRef50_Q75EQ7 Cluster: AAR022Wp; n=2; Saccharomycetaceae|Rep:
AAR022Wp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 114
Score = 35.1 bits (77), Expect = 1.5
Identities = 19/41 (46%), Positives = 26/41 (63%)
Frame = +1
Query: 256 FSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRRCKD 378
FS FG++L I AM K+RGQAFV+ + A +A+ KD
Sbjct: 56 FSTFGEVLRI-AMSP-KLRGQAFVVLSTVDEANLAMISLKD 94
>UniRef50_Q6FIQ5 Cluster: Candida glabrata strain CBS138 chromosome
M complete sequence; n=1; Candida glabrata|Rep: Candida
glabrata strain CBS138 chromosome M complete sequence -
Candida glabrata (Yeast) (Torulopsis glabrata)
Length = 299
Score = 34.7 bits (76), Expect = 2.0
Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Frame = +1
Query: 238 EVTLCK-FSQFGQILDI--VAMKTLKMRGQAFVIFKEISSATVALR 366
EV L K F+++G+I+ + V K K RG AFV+FKE SA V R
Sbjct: 128 EVQLQKVFAKYGEIVRVRVVRDKQNKSRGYAFVLFKETDSARVCTR 173
>UniRef50_Q66IT0 Cluster: MGC84815 protein; n=1; Xenopus laevis|Rep:
MGC84815 protein - Xenopus laevis (African clawed frog)
Length = 291
Score = 34.3 bits (75), Expect = 2.6
Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Frame = +1
Query: 256 FSQFGQILDIVAMK---TLKMRGQAFVIFKEISSATVA 360
+SQ+G+I D+V MK + K RG FV FKE SS A
Sbjct: 33 YSQWGEITDVVVMKDPRSNKSRGFGFVTFKEASSVDKA 70
>UniRef50_Q014L5 Cluster: Cyclophilin-type peptidyl-prolyl cis-trans
isomerase; n=1; Ostreococcus tauri|Rep: Cyclophilin-type
peptidyl-prolyl cis-trans isomerase - Ostreococcus tauri
Length = 252
Score = 34.3 bits (75), Expect = 2.6
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Frame = +1
Query: 247 LCKFSQFGQILDIVAMK---TLKMRGQAFVIFKEISSATVAL 363
LC FSQFG+I+D+ ++ T K RG AFV + + S +A+
Sbjct: 53 LCVFSQFGEIVDVNVVREEETGKSRGFAFVCYADQRSTVLAV 94
>UniRef50_A5DZH8 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 234
Score = 33.9 bits (74), Expect = 3.4
Identities = 11/30 (36%), Positives = 24/30 (80%)
Frame = +1
Query: 280 DIVAMKTLKMRGQAFVIFKEISSATVALRR 369
+I+ KTL+++GQAF+ F+++++A A+ +
Sbjct: 38 NIIVAKTLRLKGQAFITFQDVTNAQAAINQ 67
>UniRef50_A5DEK8 Cluster: Putative uncharacterized protein; n=1;
Pichia guilliermondii|Rep: Putative uncharacterized
protein - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 141
Score = 33.9 bits (74), Expect = 3.4
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = +1
Query: 223 KRRIKEVTLCKFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVA 360
+R +K FS +G ++DI+ KMRGQA +I + ++SA A
Sbjct: 38 RRLLKHNLYLLFSTYGDVIDIIIRP--KMRGQAHIILESVTSALSA 81
>UniRef50_A4V6N1 Cluster: HnRNP A2/B1 protein; n=1; Dugesia
japonica|Rep: HnRNP A2/B1 protein - Dugesia japonica
(Planarian)
Length = 386
Score = 33.1 bits (72), Expect = 6.0
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Frame = +1
Query: 256 FSQFGQILDIVAMKTL---KMRGQAFVIFKEISS 348
FS++G + D+VAM+ K RG FV+FKE S
Sbjct: 38 FSKYGDVCDVVAMRDKTGNKSRGFGFVVFKEAES 71
>UniRef50_Q75BY5 Cluster: ACR135Cp; n=1; Eremothecium gossypii|Rep:
ACR135Cp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 376
Score = 33.1 bits (72), Expect = 6.0
Identities = 21/48 (43%), Positives = 30/48 (62%)
Frame = +1
Query: 256 FSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRRCKDFHSMINQ 399
FSQFG ILDI M + K+ Q + F +I SA AL+ K+ +S +N+
Sbjct: 309 FSQFGNILDISPMISRKLCVQ--INFYDIKSAMDALQSYKNANSPLNR 354
>UniRef50_Q6E6F7 Cluster: U1 small ribonucleoprotein; n=1;
Antonospora locustae|Rep: U1 small ribonucleoprotein -
Antonospora locustae (Nosema locustae)
Length = 175
Score = 32.7 bits (71), Expect = 7.9
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 259 SQFGQILDIVAMKTLKMRGQAFVIFKEISSA 351
S++ ++D+ T+++RGQAFV FK A
Sbjct: 32 SRYAYVVDVTIWNTMRLRGQAFVTFKTTDDA 62
>UniRef50_Q6CEQ5 Cluster: Similarities with tr|Q8ITY4 Caenorhabditis
elegans Putative uncharacterized protein; n=1; Yarrowia
lipolytica|Rep: Similarities with tr|Q8ITY4
Caenorhabditis elegans Putative uncharacterized protein
- Yarrowia lipolytica (Candida lipolytica)
Length = 113
Score = 32.7 bits (71), Expect = 7.9
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +1
Query: 256 FSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRRCKDFH 384
F +FG + I A RG AFV++++I AT A++ F+
Sbjct: 31 FGRFGAVRQIRAGSEKDTRGTAFVVYEDIDDATEAVKTLSGFN 73
>UniRef50_A3LPR6 Cluster: Predicted protein; n=3;
Saccharomycetales|Rep: Predicted protein - Pichia
stipitis (Yeast)
Length = 124
Score = 32.7 bits (71), Expect = 7.9
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +1
Query: 232 IKEVTLCKFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRRCKD 378
IK FS +G I+DI K RGQA +IF ++ A++AL+ +D
Sbjct: 48 IKHNLYLLFSTYGDIIDIKNNK----RGQAHIIFTNVAGASLALKCLQD 92
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 608,960,036
Number of Sequences: 1657284
Number of extensions: 11408457
Number of successful extensions: 24046
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 23430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24040
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49173558301
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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