Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40232
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom...    51   1e-07
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi...    47   3e-06
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce...    28   1.4  
SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi...    27   3.1  
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    27   3.1  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   7.2  
SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces...    25   9.5  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    25   9.5  

>SPBC8D2.09c |||U2 snRNP-associated protein Msl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 111

 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 23/53 (43%), Positives = 36/53 (67%)
 Frame = +1

Query: 223 KRRIKEVTLCKFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRRCKDF 381
           K  ++      FS +G ++DIVA+KT KMRGQA V+F + S+A +A++  K+F
Sbjct: 17  KNDLRTALYMLFSTYGTVVDIVALKTPKMRGQAHVVFFDPSAAAIAMKALKNF 69


>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
           Usp102|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 249

 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 19/45 (42%), Positives = 32/45 (71%)
 Frame = +1

Query: 232 IKEVTLCKFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALR 366
           +K +    F  +G+++D+ A KTL+MRGQAFV+F  + +A+ AL+
Sbjct: 42  LKRILEHLFGSYGKVIDVQARKTLRMRGQAFVVFDNLENASRALK 86



 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 16/26 (61%), Positives = 20/26 (76%)
 Frame = +3

Query: 366 EMQGFPFYDKPMRIQYSKIDSDIIAK 443
           ++QG+P Y KPM IQYSK  SDII +
Sbjct: 87  DLQGYPLYGKPMMIQYSKSKSDIIVQ 112



 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 557 GAGILNNVNAEQ-PPNQILFLTNLPDEL 637
           GA   + +N +  PPN++L L N+P E+
Sbjct: 158 GAERKSTINEDLLPPNKVLLLQNIPQEV 185


>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
 Frame = +1

Query: 247 LCKFSQFGQILDIVAMK---TLKMRGQAFVIFKEISSATVAL 363
           LC FS+FG+ +DI  ++   T K +G AF+ +++  S  +A+
Sbjct: 48  LCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAV 89


>SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 308

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/57 (22%), Positives = 27/57 (47%)
 Frame = -1

Query: 455 CSFTFCYYITINF*ILNSHWFIIEWKSLHLRKATVALEISLKITNAWPRIFKVFIAT 285
           C FT      ++  I N+ W ++ WK+     +T+   ++L    +W  + ++F  T
Sbjct: 109 CPFTNTTKQNVDPEISNALWSVLTWKNTSCSFSTLMSILALVYVPSWINLPRLFFRT 165


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = +1

Query: 256 FSQFGQILDIVAMK---TLKMRGQAFVIFK 336
           F QFG++LD   M+   T + RG  F+ FK
Sbjct: 183 FEQFGEVLDCTVMRDSTTGRSRGFGFLTFK 212


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 377 SLHLRKATVALEISLKITNAWPRIFKVFI 291
           SLH+  +T+  E+ LKI  A P I   FI
Sbjct: 267 SLHVHTSTLQRELVLKILKACPDITASFI 295


>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 684

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/43 (23%), Positives = 19/43 (44%)
 Frame = +1

Query: 259 SQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRRCKDFHS 387
           S+     D+  ++T   RG+A      ++  TV  +   D H+
Sbjct: 84  SKIDNFNDLQHLQTFGFRGEALASISHVAKVTVVTKLSSDIHA 126


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 451 EHFKNDLNVQSYLKVLMMGKKEKQRS*QTYWAWYPW 558
           +H+KN++ ++  LK L+  K E      T   + PW
Sbjct: 283 QHWKNEVAMKDLLKNLIKSKLESSSDVNTPLIFDPW 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,625,754
Number of Sequences: 5004
Number of extensions: 52682
Number of successful extensions: 136
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)