Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40232
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0398 + 3142934-3143110,3143697-3143930,3144180-3144353,314... 60 2e-09
03_02_0694 - 10448712-10448996,10449030-10449074,10449588-104496... 56 2e-08
01_03_0171 - 13419944-13421362 29 4.3
11_04_0470 - 18092681-18092695,18092725-18092811,18093528-180935... 28 5.6
07_03_1061 + 23651404-23651625,23651764-23652954 28 5.6
01_04_0103 + 16046012-16046018,16046214-16046366,16046908-160471... 28 5.6
04_04_1294 - 32424762-32426309 27 9.9
>05_01_0398 + 3142934-3143110,3143697-3143930,3144180-3144353,
3144450-3144554,3145274-3145351,3146019-3146100,
3146519-3146681,3147100-3147435,3147511-3147641,
3147687-3147729,3147826-3148444,3148523-3148588,
3149103-3149265,3149557-3149635,3150232-3150431,
3150972-3151144,3151466-3151559,3152353-3152444,
3153146-3153436
Length = 1099
Score = 59.7 bits (138), Expect = 2e-09
Identities = 26/50 (52%), Positives = 40/50 (80%)
Frame = +1
Query: 232 IKEVTLCKFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRRCKDF 381
+K+ FSQFG+ILD++A KTLK +GQA+V+F++++SAT AL+ +DF
Sbjct: 885 LKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKSMQDF 934
Score = 58.4 bits (135), Expect = 5e-09
Identities = 33/86 (38%), Positives = 47/86 (54%)
Frame = +3
Query: 225 KKN*RSHFMQIFTIWSNIGYSSNENLKNAWPSICYFQGNFKCHCCFAEMQGFPFYDKPMR 404
KK+ R+ F Q I + + + ++ AW F+ MQ FPF++KPMR
Sbjct: 886 KKSLRAVFSQFGKILDVLAFKTLKHKGQAW---VVFEDVASATEALKSMQDFPFHNKPMR 942
Query: 405 IQYSKIDSDIIAKSKGTFQERPKRPK 482
IQY+K SDIIAK+ GTF R +R +
Sbjct: 943 IQYAKTKSDIIAKADGTFVPRERRKR 968
>03_02_0694 -
10448712-10448996,10449030-10449074,10449588-10449647,
10449817-10449890,10451056-10451149,10451851-10452023,
10452526-10452598
Length = 267
Score = 56.4 bits (130), Expect = 2e-08
Identities = 26/53 (49%), Positives = 38/53 (71%)
Frame = +1
Query: 223 KRRIKEVTLCKFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRRCKDF 381
K +K SQ+G+ILD+VA+KT K+RGQA+V+F EI++AT A R ++F
Sbjct: 23 KEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFSEITAATNAFRGLQEF 75
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +3
Query: 360 FAEMQGFPFYDKPMRIQYSKIDSDIIAKSKGTFQERPKRPK 482
F +Q F FY K MR+QY+K SD +A G+ + KR K
Sbjct: 69 FRGLQEFDFYGKRMRVQYAKTRSDCLATEDGSTAPKEKRKK 109
>01_03_0171 - 13419944-13421362
Length = 472
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = -1
Query: 401 HWFIIEWKSLHLRKATVALEISLKITNAWPRIFKVFIATISNI 273
H F WK L A A +IS ++ WP + +++ + ++ +
Sbjct: 163 HPFEAFWKWLRTAAADAAADISFRLDGLWPLVKRLYASLLATL 205
>11_04_0470 -
18092681-18092695,18092725-18092811,18093528-18093593,
18093696-18093740,18093850-18093903,18093987-18094082,
18094161-18094241,18095634-18095714,18095798-18095884,
18095976-18096074,18096644-18096769,18098162-18098248,
18098321-18098389,18098711-18098806,18099053-18099169,
18099710-18099790,18099873-18100010,18100307-18100580,
18100735-18100830,18101612-18101757,18102883-18103141,
18103434-18103537,18103623-18103748,18103872-18103982,
18104200-18104304
Length = 881
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -3
Query: 396 VYHRMEILASPQSNSGT*NFLENNKCLAT 310
V H + +L+SP+SN+G ++L + CL +
Sbjct: 354 VSHLLGVLSSPESNNGLLHYLLTHDCLGS 382
>07_03_1061 + 23651404-23651625,23651764-23652954
Length = 470
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +1
Query: 256 FSQFGQILDIVAM---KTLKMRGQAFVIFKEISSATVALRRCKDFHSM 390
F QFG I D+V M T + RG F+ + + AL K+FH +
Sbjct: 126 FEQFGVITDVVVMYDHNTQRPRGFGFITYDSEDAVDKALH--KNFHEL 171
>01_04_0103 +
16046012-16046018,16046214-16046366,16046908-16047158,
16047509-16047631,16047818-16047931,16048153-16048315,
16048867-16049462
Length = 468
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -2
Query: 199 DINGMVGSYIHCHFDYKT 146
D NG V S +HCH D KT
Sbjct: 208 DGNGSVASEVHCHHDAKT 225
>04_04_1294 - 32424762-32426309
Length = 515
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = +1
Query: 256 FSQFGQILD---IVAMKTLKMRGQAFVIFKEISSATVALRR 369
FS+FG++ D I ++ + +G FV+F+ SA ALRR
Sbjct: 134 FSRFGELEDCRVISDKQSGRSKGYGFVLFRSRRSALRALRR 174
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,764,849
Number of Sequences: 37544
Number of extensions: 291563
Number of successful extensions: 558
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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