Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40232
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.)              69   3e-12
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)             29   3.3  
SB_24447| Best HMM Match : TolA (HMM E-Value=1.3)                      28   5.8  

>SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 241

 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 34/53 (64%), Positives = 40/53 (75%)
 Frame = +1

Query: 223 KRRIKEVTLCKFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRRCKDF 381
           K  +K+     FSQFG ILDIVA+KTLKMRGQAFV+FK+I SAT ALR  + F
Sbjct: 20  KEELKKSLYAIFSQFGPILDIVALKTLKMRGQAFVVFKDIGSATNALRSMQGF 72



 Score = 64.1 bits (149), Expect = 9e-11
 Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
 Frame = +3

Query: 213 KRLKKKN*RSHFMQIFTIWSNI-GYSSNENLKNAWPSICYFQGNFKCHCCFAEMQGFPFY 389
           +++KK+  +     IF+ +  I    + + LK    +   F+           MQGFPFY
Sbjct: 16  EKIKKEELKKSLYAIFSQFGPILDIVALKTLKMRGQAFVVFKDIGSATNALRSMQGFPFY 75

Query: 390 DKPMRIQYSKIDSDIIAKSKGTFQERPKRPK 482
           DKPMRIQY+K  SD +AK++GTF  R K+PK
Sbjct: 76  DKPMRIQYAKGKSDAVAKAEGTFVPREKKPK 106


>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
          Length = 1531

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 256 FSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRR 369
           F ++G+++D+   K       AFV F E+SSA  A R+
Sbjct: 269 FERYGEVIDVDIKKQPGNNPYAFVQFAELSSAIQARRK 306


>SB_24447| Best HMM Match : TolA (HMM E-Value=1.3)
          Length = 325

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/66 (28%), Positives = 31/66 (46%)
 Frame = +3

Query: 288 SNENLKNAWPSICYFQGNFKCHCCFAEMQGFPFYDKPMRIQYSKIDSDIIAKSKGTFQER 467
           S++N   A+  I Y     K +  F +MQG    +K  ++  +KI  ++  KSK    E 
Sbjct: 116 SSQNFLQAYKRIQYM----KQYASFRKMQGDEIAEKQDKLAEAKIKQEVSKKSKEKALEE 171

Query: 468 PKRPKL 485
            K  K+
Sbjct: 172 NKAEKI 177


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,691,201
Number of Sequences: 59808
Number of extensions: 352301
Number of successful extensions: 661
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)