Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40232
(653 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X06347-1|CAA29653.1| 282|Homo sapiens protein ( Human mRNA for ... 68 3e-11
M60784-1|AAA61245.1| 282|Homo sapiens U1 snRNP-specific protein... 68 3e-11
BC008290-1|AAH08290.1| 282|Homo sapiens small nuclear ribonucle... 68 3e-11
BC000405-1|AAH00405.1| 282|Homo sapiens small nuclear ribonucle... 68 3e-11
M15841-1|AAA36796.1| 225|Homo sapiens protein ( Human U2 small ... 67 4e-11
BC036737-1|AAH36737.1| 225|Homo sapiens small nuclear ribonucle... 67 4e-11
BC018022-1|AAH18022.1| 225|Homo sapiens small nuclear ribonucle... 67 4e-11
BC008311-1|AAH08311.1| 109|Homo sapiens Similar to small nuclea... 67 4e-11
AL034428-1|CAB38777.2| 225|Homo sapiens small nuclear ribonucle... 67 4e-11
AL365412-1|CAB96956.1| 144|Homo sapiens hypothetical protein, s... 30 8.3
>X06347-1|CAA29653.1| 282|Homo sapiens protein ( Human mRNA for U1
small nuclear RNP-specific A protein. ).
Length = 282
Score = 68.1 bits (159), Expect = 3e-11
Identities = 37/89 (41%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Frame = +3
Query: 213 KRLKKKN*RSHFMQIFTIWSNI-GYSSNENLKNAWPSICYFQGNFKCHCCFAEMQGFPFY 389
+++KK + IF+ + I + +LK + F+ MQGFPFY
Sbjct: 19 EKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFY 78
Query: 390 DKPMRIQYSKIDSDIIAKSKGTFQERPKR 476
DKPMRIQY+K DSDIIAK KGTF ER ++
Sbjct: 79 DKPMRIQYAKTDSDIIAKMKGTFVERDRK 107
Score = 33.5 bits (73), Expect = 0.67
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +2
Query: 584 AEQPPNQILFLTNLPDE 634
+E PPN ILFLTNLP+E
Sbjct: 202 SENPPNHILFLTNLPEE 218
>M60784-1|AAA61245.1| 282|Homo sapiens U1 snRNP-specific protein A
protein.
Length = 282
Score = 68.1 bits (159), Expect = 3e-11
Identities = 37/89 (41%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Frame = +3
Query: 213 KRLKKKN*RSHFMQIFTIWSNI-GYSSNENLKNAWPSICYFQGNFKCHCCFAEMQGFPFY 389
+++KK + IF+ + I + +LK + F+ MQGFPFY
Sbjct: 19 EKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFY 78
Query: 390 DKPMRIQYSKIDSDIIAKSKGTFQERPKR 476
DKPMRIQY+K DSDIIAK KGTF ER ++
Sbjct: 79 DKPMRIQYAKTDSDIIAKMKGTFVERDRK 107
Score = 33.5 bits (73), Expect = 0.67
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +2
Query: 584 AEQPPNQILFLTNLPDE 634
+E PPN ILFLTNLP+E
Sbjct: 202 SENPPNHILFLTNLPEE 218
>BC008290-1|AAH08290.1| 282|Homo sapiens small nuclear
ribonucleoprotein polypeptide A protein.
Length = 282
Score = 68.1 bits (159), Expect = 3e-11
Identities = 37/89 (41%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Frame = +3
Query: 213 KRLKKKN*RSHFMQIFTIWSNI-GYSSNENLKNAWPSICYFQGNFKCHCCFAEMQGFPFY 389
+++KK + IF+ + I + +LK + F+ MQGFPFY
Sbjct: 19 EKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFY 78
Query: 390 DKPMRIQYSKIDSDIIAKSKGTFQERPKR 476
DKPMRIQY+K DSDIIAK KGTF ER ++
Sbjct: 79 DKPMRIQYAKTDSDIIAKMKGTFVERDRK 107
Score = 33.5 bits (73), Expect = 0.67
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +2
Query: 584 AEQPPNQILFLTNLPDE 634
+E PPN ILFLTNLP+E
Sbjct: 202 SENPPNHILFLTNLPEE 218
>BC000405-1|AAH00405.1| 282|Homo sapiens small nuclear
ribonucleoprotein polypeptide A protein.
Length = 282
Score = 68.1 bits (159), Expect = 3e-11
Identities = 37/89 (41%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Frame = +3
Query: 213 KRLKKKN*RSHFMQIFTIWSNI-GYSSNENLKNAWPSICYFQGNFKCHCCFAEMQGFPFY 389
+++KK + IF+ + I + +LK + F+ MQGFPFY
Sbjct: 19 EKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFY 78
Query: 390 DKPMRIQYSKIDSDIIAKSKGTFQERPKR 476
DKPMRIQY+K DSDIIAK KGTF ER ++
Sbjct: 79 DKPMRIQYAKTDSDIIAKMKGTFVERDRK 107
Score = 33.5 bits (73), Expect = 0.67
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +2
Query: 584 AEQPPNQILFLTNLPDE 634
+E PPN ILFLTNLP+E
Sbjct: 202 SENPPNHILFLTNLPEE 218
>M15841-1|AAA36796.1| 225|Homo sapiens protein ( Human U2 small
nuclear RNA-associated B'' antigen mRNA, complete cds.
).
Length = 225
Score = 67.3 bits (157), Expect = 4e-11
Identities = 31/53 (58%), Positives = 40/53 (75%)
Frame = +1
Query: 223 KRRIKEVTLCKFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRRCKDF 381
K +K FSQFG ++DIVA+KT+KMRGQAFVIFKE+ S+T ALR+ + F
Sbjct: 20 KEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGF 72
Score = 60.5 bits (140), Expect = 5e-09
Identities = 24/37 (64%), Positives = 32/37 (86%)
Frame = +3
Query: 366 EMQGFPFYDKPMRIQYSKIDSDIIAKSKGTFQERPKR 476
++QGFPFY KPMRIQY+K DSDII+K +GTF ++ K+
Sbjct: 68 QLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKK 104
Score = 29.9 bits (64), Expect = 8.3
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = +2
Query: 167 MDIRPNHTIYXXXXXXXXXXXXXXXSLYANF 259
MDIRPNHTIY SLYA F
Sbjct: 1 MDIRPNHTIYINNMNDKIKKEELKRSLYALF 31
>BC036737-1|AAH36737.1| 225|Homo sapiens small nuclear
ribonucleoprotein polypeptide B'' protein.
Length = 225
Score = 67.3 bits (157), Expect = 4e-11
Identities = 31/53 (58%), Positives = 40/53 (75%)
Frame = +1
Query: 223 KRRIKEVTLCKFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRRCKDF 381
K +K FSQFG ++DIVA+KT+KMRGQAFVIFKE+ S+T ALR+ + F
Sbjct: 20 KEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGF 72
Score = 60.5 bits (140), Expect = 5e-09
Identities = 24/37 (64%), Positives = 32/37 (86%)
Frame = +3
Query: 366 EMQGFPFYDKPMRIQYSKIDSDIIAKSKGTFQERPKR 476
++QGFPFY KPMRIQY+K DSDII+K +GTF ++ K+
Sbjct: 68 QLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKK 104
Score = 29.9 bits (64), Expect = 8.3
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = +2
Query: 167 MDIRPNHTIYXXXXXXXXXXXXXXXSLYANF 259
MDIRPNHTIY SLYA F
Sbjct: 1 MDIRPNHTIYINNMNDKIKKEELKRSLYALF 31
>BC018022-1|AAH18022.1| 225|Homo sapiens small nuclear
ribonucleoprotein polypeptide B'' protein.
Length = 225
Score = 67.3 bits (157), Expect = 4e-11
Identities = 31/53 (58%), Positives = 40/53 (75%)
Frame = +1
Query: 223 KRRIKEVTLCKFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRRCKDF 381
K +K FSQFG ++DIVA+KT+KMRGQAFVIFKE+ S+T ALR+ + F
Sbjct: 20 KEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGF 72
Score = 60.5 bits (140), Expect = 5e-09
Identities = 24/37 (64%), Positives = 32/37 (86%)
Frame = +3
Query: 366 EMQGFPFYDKPMRIQYSKIDSDIIAKSKGTFQERPKR 476
++QGFPFY KPMRIQY+K DSDII+K +GTF ++ K+
Sbjct: 68 QLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKK 104
Score = 29.9 bits (64), Expect = 8.3
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = +2
Query: 167 MDIRPNHTIYXXXXXXXXXXXXXXXSLYANF 259
MDIRPNHTIY SLYA F
Sbjct: 1 MDIRPNHTIYINNMNDKIKKEELKRSLYALF 31
>BC008311-1|AAH08311.1| 109|Homo sapiens Similar to small nuclear
ribonucleoprotein polypeptide B'' protein.
Length = 109
Score = 67.3 bits (157), Expect = 4e-11
Identities = 31/53 (58%), Positives = 40/53 (75%)
Frame = +1
Query: 223 KRRIKEVTLCKFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRRCKDF 381
K +K FSQFG ++DIVA+KT+KMRGQAFVIFKE+ S+T ALR+ + F
Sbjct: 20 KEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGF 72
Score = 62.1 bits (144), Expect = 2e-09
Identities = 25/39 (64%), Positives = 33/39 (84%)
Frame = +3
Query: 366 EMQGFPFYDKPMRIQYSKIDSDIIAKSKGTFQERPKRPK 482
++QGFPFY KPMRIQY+K DSDII+K +GTF ++ K+ K
Sbjct: 68 QLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKK 106
Score = 29.9 bits (64), Expect = 8.3
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = +2
Query: 167 MDIRPNHTIYXXXXXXXXXXXXXXXSLYANF 259
MDIRPNHTIY SLYA F
Sbjct: 1 MDIRPNHTIYINNMNDKIKKEELKRSLYALF 31
>AL034428-1|CAB38777.2| 225|Homo sapiens small nuclear
ribonucleoprotein polypeptide B'' protein.
Length = 225
Score = 67.3 bits (157), Expect = 4e-11
Identities = 31/53 (58%), Positives = 40/53 (75%)
Frame = +1
Query: 223 KRRIKEVTLCKFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRRCKDF 381
K +K FSQFG ++DIVA+KT+KMRGQAFVIFKE+ S+T ALR+ + F
Sbjct: 20 KEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGF 72
Score = 60.5 bits (140), Expect = 5e-09
Identities = 24/37 (64%), Positives = 32/37 (86%)
Frame = +3
Query: 366 EMQGFPFYDKPMRIQYSKIDSDIIAKSKGTFQERPKR 476
++QGFPFY KPMRIQY+K DSDII+K +GTF ++ K+
Sbjct: 68 QLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKK 104
Score = 29.9 bits (64), Expect = 8.3
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = +2
Query: 167 MDIRPNHTIYXXXXXXXXXXXXXXXSLYANF 259
MDIRPNHTIY SLYA F
Sbjct: 1 MDIRPNHTIYINNMNDKIKKEELKRSLYALF 31
>AL365412-1|CAB96956.1| 144|Homo sapiens hypothetical protein,
similar to (NP_006139.1) LASP-1, LIM and SH3 domain
prote protein.
Length = 144
Score = 29.9 bits (64), Expect = 8.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 603 WLGGCSALTLFRIPAPGIPCP 541
W+G C+A + R+P P +P P
Sbjct: 43 WVGRCTAFSFLRLPFPSLPFP 63
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,661,127
Number of Sequences: 237096
Number of extensions: 1659738
Number of successful extensions: 2851
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2847
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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