Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40232
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55857-7|AAA98033.1|  217|Caenorhabditis elegans Rnp (rrm rna bi...    57   1e-08
U55857-6|AAA98032.2|  206|Caenorhabditis elegans Rnp (rrm rna bi...    52   3e-07
D10877-1|BAA01645.1|  346|Caenorhabditis elegans hnRNP like prot...    30   1.2  
AF038613-8|AAL02515.2|  309|Caenorhabditis elegans Human hnrnp a...    30   1.2  
AF038613-7|ABB51185.1|  308|Caenorhabditis elegans Human hnrnp a...    30   1.2  
AF038613-6|ABB51186.1|  347|Caenorhabditis elegans Human hnrnp a...    30   1.2  
AF038613-5|AAB92051.1|  346|Caenorhabditis elegans Human hnrnp a...    30   1.2  
AF047662-1|AAC04442.1|  248|Caenorhabditis elegans Suppressor pr...    30   1.6  
AF040642-5|AAN73870.2|  138|Caenorhabditis elegans Hypothetical ...    30   1.6  
Z46934-4|CAA87042.3|  519|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AF068709-8|AAO26015.1|  315|Caenorhabditis elegans Serpentine re...    28   6.7  

>U55857-7|AAA98033.1|  217|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 3 protein.
          Length = 217

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 22/36 (61%), Positives = 32/36 (88%)
 Frame = +3

Query: 369 MQGFPFYDKPMRIQYSKIDSDIIAKSKGTFQERPKR 476
           +QGFPFY KPMRIQY++ DSD+I+++KGTF E+ ++
Sbjct: 70  LQGFPFYGKPMRIQYAREDSDVISRAKGTFVEKRQK 105



 Score = 50.8 bits (116), Expect = 8e-07
 Identities = 23/53 (43%), Positives = 36/53 (67%)
 Frame = +1

Query: 223 KRRIKEVTLCKFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRRCKDF 381
           K  +K      F+QFG+I+ +++ +  KMRGQA ++FKE+SSA+ ALR  + F
Sbjct: 21  KDELKRSLHMVFTQFGEIIQLMSFRKEKMRGQAHIVFKEVSSASNALRALQGF 73


>U55857-6|AAA98032.2|  206|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 2 protein.
          Length = 206

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 21/36 (58%), Positives = 31/36 (86%), Gaps = 1/36 (2%)
 Frame = +3

Query: 369 MQGFPFYDKPMRIQYSKIDSDIIAKSKGTFQER-PK 473
           + GFPFY+KPMRIQ+++ DSD++A+ KGT+ +R PK
Sbjct: 70  LNGFPFYEKPMRIQFAREDSDVVAQEKGTYIKREPK 105



 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 21/50 (42%), Positives = 33/50 (66%)
 Frame = +1

Query: 232 IKEVTLCKFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRRCKDF 381
           +++  +  F QFG+I+ ++  +TLKMRGQA VIFKE+ +A+ A      F
Sbjct: 24  LRKSLVAVFKQFGEIVSVMCFRTLKMRGQAHVIFKELPAASAAREALNGF 73



 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +2

Query: 572 NNVNAEQPPNQILFLTNLPD 631
           N  +   PPN+ILF TNLPD
Sbjct: 122 NGGDGPAPPNKILFCTNLPD 141


>D10877-1|BAA01645.1|  346|Caenorhabditis elegans hnRNP like protein
           protein.
          Length = 346

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = +1

Query: 256 FSQFGQILDIVAMK---TLKMRGQAFVIFKEISSATVALRR 369
           +SQFG+I DI+ M+   T + RG  FV F   +    A+++
Sbjct: 43  YSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 83


>AF038613-8|AAL02515.2|  309|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform b protein.
          Length = 309

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = +1

Query: 256 FSQFGQILDIVAMK---TLKMRGQAFVIFKEISSATVALRR 369
           +SQFG+I DI+ M+   T + RG  FV F   +    A+++
Sbjct: 5   YSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 45


>AF038613-7|ABB51185.1|  308|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform c protein.
          Length = 308

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = +1

Query: 256 FSQFGQILDIVAMK---TLKMRGQAFVIFKEISSATVALRR 369
           +SQFG+I DI+ M+   T + RG  FV F   +    A+++
Sbjct: 5   YSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 45


>AF038613-6|ABB51186.1|  347|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform d protein.
          Length = 347

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = +1

Query: 256 FSQFGQILDIVAMK---TLKMRGQAFVIFKEISSATVALRR 369
           +SQFG+I DI+ M+   T + RG  FV F   +    A+++
Sbjct: 43  YSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 83


>AF038613-5|AAB92051.1|  346|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform a protein.
          Length = 346

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = +1

Query: 256 FSQFGQILDIVAMK---TLKMRGQAFVIFKEISSATVALRR 369
           +SQFG+I DI+ M+   T + RG  FV F   +    A+++
Sbjct: 43  YSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 83


>AF047662-1|AAC04442.1|  248|Caenorhabditis elegans Suppressor
           protein 12 protein.
          Length = 248

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = +1

Query: 256 FSQFGQILDIVAM---KTLKMRGQAFVIFKEISSATVALRRCKDFHSMIN 396
           F QFG I + V +    T K RG  FV  K+ +SA    R CKD + +I+
Sbjct: 55  FEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAE---RACKDPNPIID 101


>AF040642-5|AAN73870.2|  138|Caenorhabditis elegans Hypothetical
           protein C50D2.5 protein.
          Length = 138

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 256 FSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRRCKDFH 384
           F +FG +  I    T + RG AFV++++I  A  A      ++
Sbjct: 39  FGKFGAVRQIRVGNTAETRGTAFVVYEDIFDAKTACEHLSGYN 81


>Z46934-4|CAA87042.3|  519|Caenorhabditis elegans Hypothetical
           protein ZK1320.4 protein.
          Length = 519

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +1

Query: 28  QRKLPRPVKRICIQFDSAFTHIGSIEFVPC 117
           Q+KL   ++R CI+   +F H+  ++++ C
Sbjct: 349 QKKLQEEIERECIEPSISFDHLSKLKYMDC 378


>AF068709-8|AAO26015.1|  315|Caenorhabditis elegans Serpentine
          receptor, class g (gamma)protein 59 protein.
          Length = 315

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -3

Query: 81 GGIKLYTNSFYRSRQFSL 28
          G  K+YTNSFYR  Q SL
Sbjct: 44 GNSKIYTNSFYRIVQISL 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,316,919
Number of Sequences: 27780
Number of extensions: 285329
Number of successful extensions: 575
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)