Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40231
         (511 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S...   104   7e-24
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa...   104   9e-24
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    27   1.6  
SPAC27D7.06 |||electron transfer flavoprotein alpha subunit|Schi...    26   3.8  
SPAC11D3.03c |||meiotic chromosome segregation protein|Schizosac...    25   5.0  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.6  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    25   6.6  
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    25   6.6  
SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate syntha...    25   8.7  

>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score =  104 bits (250), Expect = 7e-24
 Identities = 47/76 (61%), Positives = 63/76 (82%)
 Frame = +3

Query: 6   MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 185
           ML+PK+NR AI++ LF++GV+VAKKD++ PKH E+  +PNLQVIKA QSL SRGY+K ++
Sbjct: 1   MLIPKENRKAIHQALFQQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRY 59

Query: 186 AWRHFYWYLTNEGIEY 233
            W  FY+ LTNEG+EY
Sbjct: 60  NWGWFYYTLTNEGVEY 75



 Score = 39.1 bits (87), Expect = 4e-04
 Identities = 28/71 (39%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +2

Query: 260 EIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKAD-VGPGS 436
           E+VPAT KR VR    R    GRP+   RS+   + YRR          +KK D   PG 
Sbjct: 85  EVVPATHKRQVRPAAPR---AGRPEPRERSSAADAGYRRA---------EKKDDGAAPGG 132

Query: 437 ADLEFKGGYGR 469
               F+GG+GR
Sbjct: 133 FAPSFRGGFGR 143


>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score =  104 bits (249), Expect = 9e-24
 Identities = 47/76 (61%), Positives = 62/76 (81%)
 Frame = +3

Query: 6   MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 185
           ML+PK+NR AI++ LF +GV+VAKKD++ PKH E+  +PNLQVIKA QSL SRGY+K ++
Sbjct: 1   MLIPKENRKAIHQALFSQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRY 59

Query: 186 AWRHFYWYLTNEGIEY 233
            W  FY+ LTNEG+EY
Sbjct: 60  NWGWFYYTLTNEGVEY 75



 Score = 34.3 bits (75), Expect = 0.011
 Identities = 25/70 (35%), Positives = 32/70 (45%)
 Frame = +2

Query: 260 EIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSA 439
           E+VPAT KR VR    R    GRP+   R++ D + YRR           K     P   
Sbjct: 85  EVVPATHKRQVRPTAPR---AGRPEPRERASAD-AGYRRA--------EKKDEGAAPSGF 132

Query: 440 DLEFKGGYGR 469
              F+GG+GR
Sbjct: 133 APSFRGGFGR 142


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 251 PSPEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRS 364
           P P I P ++   V   TVR G    PD P+ S   R+
Sbjct: 789 PYPFIQPPSMTNQVAYPTVRDGSNNSPDHPSSSNSKRT 826


>SPAC27D7.06 |||electron transfer flavoprotein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 341

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -2

Query: 363 DLSSAERAGASGRPTGPRRT 304
           DLSSAER  A GRP   + T
Sbjct: 221 DLSSAERVVAGGRPLKDKET 240


>SPAC11D3.03c |||meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 15/64 (23%), Positives = 29/64 (45%)
 Frame = -2

Query: 432 PGPTSAFLS*GATPGAAGVRLYADLSSAERAGASGRPTGPRRTVSVRTERLSVAGTISGE 253
           P P  A+     +P  A   LYA +++A +         PR  ++V+  + S+   +  E
Sbjct: 22  PKPLPAYYPHPGSPLYADKELYARIANAPKKLVGRHVCQPRTGLAVKIPQKSIFSIVVPE 81

Query: 252 GARI 241
           G ++
Sbjct: 82  GPQV 85


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 20/91 (21%), Positives = 40/91 (43%)
 Frame = -2

Query: 450 NSRSAEPGPTSAFLS*GATPGAAGVRLYADLSSAERAGASGRPTGPRRTVSVRTERLSVA 271
           +S S+ P  TS+ +S  ++  ++     +  S +  +  S  PT    T+S  +   S +
Sbjct: 294 SSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPS-S 352

Query: 270 GTISGEGARIFSSIQYPHWLGTSKSASRQTV 178
            + S   +   SS  +   + +S S S  T+
Sbjct: 353 SSFSSTTSSSKSSSSFSSTVSSSSSTSSSTL 383


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 88  MHRSILN*RRFLTSKLSKLCNHSSPEVM-SKN 180
           +H + L+  RFL + L ++C H+   +M SKN
Sbjct: 895 LHPAHLSVFRFLIAHLGRVCKHAEKNLMNSKN 926


>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 329 PDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSAD 442
           P+A   S+    +Y +  A+    P    +DVG GSA+
Sbjct: 321 PEASMESSAPTESYDKPAASEEQQPLQNHSDVGNGSAE 358


>SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate synthase
           Arg5 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 415

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 236 ENILAPSPEIVPATLKRSVRTETVRRGPV 322
           E IL   P    A  +  + T T+R GP+
Sbjct: 27  ERILPKQPSFPTAPAQNEIATLTIRNGPI 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,968,447
Number of Sequences: 5004
Number of extensions: 36362
Number of successful extensions: 110
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)