Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40231
(511 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0970 + 21338072-21338074,21338192-21338240,21338688-213389... 107 4e-24
02_04_0177 + 20669053-20669055,20669150-20669198,20669680-206699... 107 4e-24
01_07_0270 - 42417782-42417850,42418207-42418342,42418826-424191... 104 5e-23
01_07_0054 - 40779336-40779599,40779734-40779848,40779998-407801... 30 0.94
06_03_0930 - 26038341-26038508,26039114-26039254,26040799-260408... 30 1.2
11_01_0746 + 6294277-6294687 29 1.6
06_01_1074 - 8765183-8765278,8765657-8765749,8766520-8766600,876... 29 1.6
08_02_1148 - 24693323-24693877,24694092-24694315,24694519-246946... 29 2.2
03_06_0519 - 34481751-34482722 29 2.9
02_05_0460 - 29224525-29224620,29225525-29226625 28 3.8
01_01_0743 - 5763654-5766902 28 3.8
12_02_0020 - 12388777-12389062,12389637-12389818 28 5.0
03_05_0528 - 25268396-25269217 28 5.0
01_06_1758 - 39681942-39682030,39682115-39682345,39682643-396826... 28 5.0
01_05_0305 + 20659199-20660026,20660147-20660179 28 5.0
08_02_0955 + 22994266-22995630 27 6.6
02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,881... 27 6.6
09_03_0062 - 11969719-11970036,11970115-11970843 27 8.8
07_03_0941 - 22763733-22763970,22764077-22764213,22764282-227644... 27 8.8
05_05_0132 - 22611030-22611908,22612016-22612135,22612644-226128... 27 8.8
02_05_0146 - 26267245-26267339,26267427-26267469,26267589-262677... 27 8.8
>04_03_0970 +
21338072-21338074,21338192-21338240,21338688-21338970,
21339570-21339705,21339761-21339769
Length = 159
Score = 107 bits (258), Expect = 4e-24
Identities = 45/76 (59%), Positives = 64/76 (84%)
Frame = +3
Query: 6 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 185
M++PK+NR I +YLF+EGV+ AKKDY+ KH +++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQID-VPNLQVIKLMQSFKSKEYVRETF 59
Query: 186 AWRHFYWYLTNEGIEY 233
+W+++YWYLTN+GIE+
Sbjct: 60 SWQYYYWYLTNDGIEH 75
Score = 35.1 bits (77), Expect = 0.033
Identities = 30/82 (36%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Frame = +2
Query: 233 LENILAPSPEIVPATLKRSVRT--ETVRRGPVG-RPDAPARSAEDRSAYRRTPAAPGVAP 403
L N L EIVPATLK+S R GP G RP P R DR + G P
Sbjct: 76 LRNYLNLPSEIVPATLKKSARPPGRPFGSGPPGDRPRGPPRFEGDRPRFGDRDGYRG-GP 134
Query: 404 HDKKADVG--PGSADLEFKGGY 463
D G G A EF+ +
Sbjct: 135 RGAPGDFGGEKGGAPAEFQPSF 156
>02_04_0177 +
20669053-20669055,20669150-20669198,20669680-20669962,
20670526-20670661,20671014-20671094
Length = 183
Score = 107 bits (258), Expect = 4e-24
Identities = 45/76 (59%), Positives = 64/76 (84%)
Frame = +3
Query: 6 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 185
M++PK+NR I +YLF+EGV+ AKKDY+ KH +++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQID-VPNLQVIKLMQSFKSKEYVRETF 59
Query: 186 AWRHFYWYLTNEGIEY 233
+W+++YWYLTN+GIE+
Sbjct: 60 SWQYYYWYLTNDGIEH 75
Score = 36.3 bits (80), Expect = 0.014
Identities = 33/89 (37%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Frame = +2
Query: 233 LENILAPSPEIVPATLKRSVRT--ETVRRGPVG-RPDAPARSAEDRSAYRRTPAAPGVAP 403
L N L EIVPATLK+S R GP G RP P R DR + G P
Sbjct: 76 LRNYLNLPSEIVPATLKKSARPPGRPFGSGPPGDRPRGPPRFEGDRPRFGDRDGYRG-GP 134
Query: 404 HDKKADVG--PGSADLEFKGGY--GRGRP 478
D G G A EF+ + GRP
Sbjct: 135 RGAPGDFGGEKGGAPAEFQPSFRSSGGRP 163
>01_07_0270 -
42417782-42417850,42418207-42418342,42418826-42419108,
42419459-42419507,42419614-42419616
Length = 179
Score = 104 bits (249), Expect = 5e-23
Identities = 44/76 (57%), Positives = 62/76 (81%)
Frame = +3
Query: 6 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 185
M++ K+NR I +YLF EGV+ AKKDY+ KH +++ +PNL+VIK MQS KS+ YV+E F
Sbjct: 1 MIISKKNRREICKYLFHEGVLYAKKDYNLAKHPKVD-VPNLEVIKLMQSFKSKEYVRETF 59
Query: 186 AWRHFYWYLTNEGIEY 233
+W+H+YWYLTN+GIE+
Sbjct: 60 SWQHYYWYLTNDGIEH 75
>01_07_0054 -
40779336-40779599,40779734-40779848,40779998-40780181,
40780322-40780393,40780485-40780611,40780830-40781011,
40781099-40781249
Length = 364
Score = 30.3 bits (65), Expect = 0.94
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +3
Query: 36 IYEYLFKEGVMVA-KKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYL 212
+Y+ L ++G +VA KK + P H + ++ L I+ + GY +E Y Y+
Sbjct: 84 VYKGLLQDGTIVAIKKRHSPPSHEFIHEVNYLSSIRHRNLVNLLGYCQENGMQMLVYEYV 143
Query: 213 TNEGI 227
N +
Sbjct: 144 PNGSV 148
>06_03_0930 -
26038341-26038508,26039114-26039254,26040799-26040858,
26040972-26041034,26041444-26041454,26041722-26041802,
26042783-26043020,26043563-26043997
Length = 398
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 341 ARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRG 472
AR RS+ RR+P+ G A + G ++ L++ GG G G
Sbjct: 58 ARGKRSRSSRRRSPSGSGSAATKGRWARGSPASPLDYSGGSGSG 101
>11_01_0746 + 6294277-6294687
Length = 136
Score = 29.5 bits (63), Expect = 1.6
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Frame = -2
Query: 396 TPGAA---GVRLYADLSSAERAGASGRPT--GPRRTVSVRTERLSVAGTISGEGARIFSS 232
T GAA G + ++ R+GAS RPT G + V +E ++V G + A + SS
Sbjct: 51 TKGAAATLGGNSTGEEAARSRSGASSRPTGGGVGKGVDGGSEVVAVLGRTEADPAALSSS 110
Query: 231 IQYPHWLG 208
+ W G
Sbjct: 111 SAWEEWRG 118
>06_01_1074 -
8765183-8765278,8765657-8765749,8766520-8766600,
8767092-8767173,8767261-8767313,8767391-8767456,
8767534-8767697,8768028-8768295
Length = 300
Score = 29.5 bits (63), Expect = 1.6
Identities = 18/44 (40%), Positives = 20/44 (45%)
Frame = +2
Query: 347 SAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGRP 478
SA RS R TP P + PH K+A P S L G G P
Sbjct: 3 SAAPRS--RLTPPTPAMHPHRKRARSPPASGSLVRCSSSGNGAP 44
>08_02_1148 -
24693323-24693877,24694092-24694315,24694519-24694636,
24694761-24695132,24696998-24697324
Length = 531
Score = 29.1 bits (62), Expect = 2.2
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = -2
Query: 381 GVRLYADLSSAERAGASGRPTGPRRTVSVRTERLSVAGTISGEGARIFS 235
G L +DL AGA P P+R R + G +SG G +FS
Sbjct: 2 GSCLSSDLPPRAGAGAGASPGWPQRWRRRRQRGVERGGAVSGGGGGVFS 50
>03_06_0519 - 34481751-34482722
Length = 323
Score = 28.7 bits (61), Expect = 2.9
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = +2
Query: 308 RRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGRPAS 484
R+G G PA S+ + RR+ G AP D A+ GP S + PA+
Sbjct: 23 RKGKRGAEAPPATSSSTPTTARRSKRLAG-APPDHPAEAGPSSTNARRSSRLAGAPPAT 80
>02_05_0460 - 29224525-29224620,29225525-29226625
Length = 398
Score = 28.3 bits (60), Expect = 3.8
Identities = 17/41 (41%), Positives = 17/41 (41%)
Frame = +2
Query: 317 PVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSA 439
PV APA AE S R P P PH A V SA
Sbjct: 270 PVSPASAPAALAESSSEELRPPPLPSSHPHAHAAAVVAASA 310
>01_01_0743 - 5763654-5766902
Length = 1082
Score = 28.3 bits (60), Expect = 3.8
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 363 DLSSAERAGASGRPTGPRRTVSVRTERLSVAGTISGEGARIFSS 232
+ +SA R + R PR V V+ ERL AG + E R+ S
Sbjct: 44 EAASAPRGAKNSRSRAPRTDVDVQIERLCRAGELE-EALRLLGS 86
>12_02_0020 - 12388777-12389062,12389637-12389818
Length = 155
Score = 27.9 bits (59), Expect = 5.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 320 VGRPDAPARSAEDRSAYRRTPAAP 391
+GRP R E+RS +RTP+ P
Sbjct: 47 IGRPKGEGREWEERSRSQRTPSPP 70
>03_05_0528 - 25268396-25269217
Length = 273
Score = 27.9 bits (59), Expect = 5.0
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 428 PGSADLEFKGGYGRG 472
PGS +LE GGYG G
Sbjct: 106 PGSTELEINGGYGEG 120
>01_06_1758 -
39681942-39682030,39682115-39682345,39682643-39682679,
39683604-39683835,39683937-39684022,39684126-39684218,
39684302-39684465,39684541-39684702,39684783-39684962,
39685079-39685515,39685614-39685669
Length = 588
Score = 27.9 bits (59), Expect = 5.0
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Frame = +2
Query: 293 RTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAP--HDKKADVGPGSADLEFKGGYG 466
R + PV APA + +AY PAAP VAP D G G GG+G
Sbjct: 17 RRSDLAGAPVLAASAPAAANPYAAAYAPAPAAP-VAPAGGDFSRFGGRGRGGGAGGGGWG 75
Query: 467 RG 472
RG
Sbjct: 76 RG 77
>01_05_0305 + 20659199-20660026,20660147-20660179
Length = 286
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +2
Query: 272 ATLKRSVRTETVRRGPVG--RPDAPARSAEDRSAYRRTPAAPGVA 400
A S+ TV GP G +P P + +++RR P+A GV+
Sbjct: 136 AAADSSLSPNTVLHGPYGGNKPPRPLTRSGSTASHRRKPSAVGVS 180
>08_02_0955 + 22994266-22995630
Length = 454
Score = 27.5 bits (58), Expect = 6.6
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = -2
Query: 447 SRSAEPGPTSAFLS*GATPGAAGVRLYADLSSAERAGASGRPTGPRRT 304
SRS P +A LS +TP +A V A S A A R PRR+
Sbjct: 45 SRSKTPPHNAAVLS--STPASAAVDFVAASDSDAGADADARLASPRRS 90
>02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,
8812361-8812492,8812681-8812864,8813002-8813135,
8813552-8813656,8813738-8813839,8813930-8814022,
8814136-8814456,8814595-8814696,8814791-8814853,
8815213-8815708,8815964-8816124,8816213-8816743,
8817077-8817118,8817203-8817334,8817639-8817703,
8817858-8818169,8818262-8818334,8818425-8818517,
8819440-8819501,8819740-8819809
Length = 1777
Score = 27.5 bits (58), Expect = 6.6
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +2
Query: 254 SPEIVPA---TLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKA 418
SP ++P+ T K+ V++ + P G P + SAE+ S A+P P KA
Sbjct: 1282 SPRVLPSEAVTAKKLVKSSSFNSKP-GSPAISSNSAENSSNPNSLSASPATTPAAAKA 1338
>09_03_0062 - 11969719-11970036,11970115-11970843
Length = 348
Score = 27.1 bits (57), Expect = 8.8
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -2
Query: 228 QYPHWLGTSKSASRQ 184
Q+PHWLGT+ AS++
Sbjct: 172 QHPHWLGTAGYASKE 186
>07_03_0941 -
22763733-22763970,22764077-22764213,22764282-22764470,
22765238-22765756,22766319-22767357,22767665-22767759,
22768253-22768357
Length = 773
Score = 27.1 bits (57), Expect = 8.8
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -2
Query: 324 PTGPRRTVSVRTERLSVAGTISGEGARIFSSIQYPHW 214
P + ++TE+ + GT G G+ SI+Y W
Sbjct: 492 PAAVSKFFDIQTEKKRIGGTGEGLGSGSIYSIEYKEW 528
>05_05_0132 -
22611030-22611908,22612016-22612135,22612644-22612856,
22612968-22613288,22613421-22613504
Length = 538
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 248 APSPEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYR 373
A S + A +++ V R P APARSAE+ +A +
Sbjct: 85 AKSSDAAAAAAQKTATATAVTRPTTTAPRAPARSAEELAAVK 126
>02_05_0146 -
26267245-26267339,26267427-26267469,26267589-26267725,
26268172-26268299,26268419-26268495,26268593-26268679,
26268817-26268933,26269115-26269165,26269383-26269497,
26270033-26270292
Length = 369
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -1
Query: 400 CNTRGSRSTSVCRSVLSRAGWGIRTTNRATAYCL 299
C T ++ + + R WG R TNRAT + L
Sbjct: 327 CPTCLCTGMAMANNSIDRRAWGSRLTNRATLHIL 360
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,120,777
Number of Sequences: 37544
Number of extensions: 251150
Number of successful extensions: 941
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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