Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40231
(511 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY070896-1|AAL48518.1| 160|Drosophila melanogaster LP04958p pro... 140 1e-33
AE014298-2882|AAN09507.1| 160|Drosophila melanogaster CG14206-P... 140 1e-33
AE014298-2881|AAF48978.2| 160|Drosophila melanogaster CG14206-P... 140 1e-33
AE014297-4155|AAF56731.1| 163|Drosophila melanogaster CG12275-P... 134 7e-32
AF145693-1|AAD38668.2| 162|Drosophila melanogaster LD32148p pro... 132 3e-31
BT003619-1|AAO39622.1| 1167|Drosophila melanogaster GH12052p pro... 29 4.8
AE014296-1190|AAX52757.1| 1644|Drosophila melanogaster CG33556-P... 29 4.8
AB061681-1|BAC76439.1| 1644|Drosophila melanogaster ah1644 protein. 29 4.8
BT012663-1|AAT08469.1| 1057|Drosophila melanogaster RE66582p pro... 28 6.4
AE014296-1456|AAF50415.2| 1039|Drosophila melanogaster CG7015-PA... 28 6.4
M27431-1|AAA28868.1| 1896|Drosophila melanogaster protein ( D.me... 28 8.4
M19537-1|AAA28827.1| 408|Drosophila melanogaster RNA polymerase... 28 8.4
AY089555-1|AAL90293.1| 1429|Drosophila melanogaster LD43558p pro... 28 8.4
AY069546-1|AAL39691.1| 429|Drosophila melanogaster LD27370p pro... 28 8.4
AE014298-1637|AAF48057.1| 1887|Drosophila melanogaster CG1554-PA... 28 8.4
AE014296-2787|AAF49424.2| 2224|Drosophila melanogaster CG9695-PA... 28 8.4
AE014296-2473|AAF49667.2| 429|Drosophila melanogaster CG6854-PA... 28 8.4
>AY070896-1|AAL48518.1| 160|Drosophila melanogaster LP04958p
protein.
Length = 160
Score = 140 bits (338), Expect = 1e-33
Identities = 63/75 (84%), Positives = 67/75 (89%)
Frame = +3
Query: 6 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 185
M MPK +RVAIYEYLFKEGV+VAKKD+HA KH ELE IPNL VIKAMQSL SRG VKEQF
Sbjct: 1 MFMPKAHRVAIYEYLFKEGVIVAKKDFHAQKHPELESIPNLHVIKAMQSLHSRGLVKEQF 60
Query: 186 AWRHFYWYLTNEGIE 230
AWRH+YWYLTNEGIE
Sbjct: 61 AWRHYYWYLTNEGIE 75
Score = 88.6 bits (210), Expect = 4e-18
Identities = 47/84 (55%), Positives = 58/84 (69%), Gaps = 4/84 (4%)
Frame = +2
Query: 233 LENILAPSPEIVPATLKRSVRTETVRRGP-VGRPDAP---ARSAEDRSAYRRTPAAPGVA 400
L + L PEIVP+TLKR R+ETVR P VG P P +++ EDRSAYRR P GV
Sbjct: 77 LRSYLHLPPEIVPSTLKRPARSETVRPRPAVGGPRGPGDASKTGEDRSAYRRAPGGSGV- 135
Query: 401 PHDKKADVGPGSADLEFKGGYGRG 472
DKK DVGPG+ ++EF+GG+GRG
Sbjct: 136 --DKKGDVGPGAGEVEFRGGFGRG 157
>AE014298-2882|AAN09507.1| 160|Drosophila melanogaster CG14206-PC,
isoform C protein.
Length = 160
Score = 140 bits (338), Expect = 1e-33
Identities = 63/75 (84%), Positives = 67/75 (89%)
Frame = +3
Query: 6 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 185
M MPK +RVAIYEYLFKEGV+VAKKD+HA KH ELE IPNL VIKAMQSL SRG VKEQF
Sbjct: 1 MFMPKAHRVAIYEYLFKEGVIVAKKDFHAQKHPELESIPNLHVIKAMQSLHSRGLVKEQF 60
Query: 186 AWRHFYWYLTNEGIE 230
AWRH+YWYLTNEGIE
Sbjct: 61 AWRHYYWYLTNEGIE 75
Score = 88.6 bits (210), Expect = 4e-18
Identities = 47/84 (55%), Positives = 58/84 (69%), Gaps = 4/84 (4%)
Frame = +2
Query: 233 LENILAPSPEIVPATLKRSVRTETVRRGP-VGRPDAP---ARSAEDRSAYRRTPAAPGVA 400
L + L PEIVP+TLKR R+ETVR P VG P P +++ EDRSAYRR P GV
Sbjct: 77 LRSYLHLPPEIVPSTLKRPARSETVRPRPAVGGPRGPGDASKTGEDRSAYRRAPGGSGV- 135
Query: 401 PHDKKADVGPGSADLEFKGGYGRG 472
DKK DVGPG+ ++EF+GG+GRG
Sbjct: 136 --DKKGDVGPGAGEVEFRGGFGRG 157
>AE014298-2881|AAF48978.2| 160|Drosophila melanogaster CG14206-PB,
isoform B protein.
Length = 160
Score = 140 bits (338), Expect = 1e-33
Identities = 63/75 (84%), Positives = 67/75 (89%)
Frame = +3
Query: 6 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 185
M MPK +RVAIYEYLFKEGV+VAKKD+HA KH ELE IPNL VIKAMQSL SRG VKEQF
Sbjct: 1 MFMPKAHRVAIYEYLFKEGVIVAKKDFHAQKHPELESIPNLHVIKAMQSLHSRGLVKEQF 60
Query: 186 AWRHFYWYLTNEGIE 230
AWRH+YWYLTNEGIE
Sbjct: 61 AWRHYYWYLTNEGIE 75
Score = 88.6 bits (210), Expect = 4e-18
Identities = 47/84 (55%), Positives = 58/84 (69%), Gaps = 4/84 (4%)
Frame = +2
Query: 233 LENILAPSPEIVPATLKRSVRTETVRRGP-VGRPDAP---ARSAEDRSAYRRTPAAPGVA 400
L + L PEIVP+TLKR R+ETVR P VG P P +++ EDRSAYRR P GV
Sbjct: 77 LRSYLHLPPEIVPSTLKRPARSETVRPRPAVGGPRGPGDASKTGEDRSAYRRAPGGSGV- 135
Query: 401 PHDKKADVGPGSADLEFKGGYGRG 472
DKK DVGPG+ ++EF+GG+GRG
Sbjct: 136 --DKKGDVGPGAGEVEFRGGFGRG 157
>AE014297-4155|AAF56731.1| 163|Drosophila melanogaster CG12275-PA
protein.
Length = 163
Score = 134 bits (324), Expect = 7e-32
Identities = 61/75 (81%), Positives = 66/75 (88%)
Frame = +3
Query: 6 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 185
M +PK NRVAIYEYLFKEGV+VAKKD KH+EL+KIPNLQVIK MQSL SRG+VKEQF
Sbjct: 1 MFIPKANRVAIYEYLFKEGVLVAKKDSPIQKHSELDKIPNLQVIKVMQSLNSRGWVKEQF 60
Query: 186 AWRHFYWYLTNEGIE 230
AWRHFYW LTNEGIE
Sbjct: 61 AWRHFYWLLTNEGIE 75
Score = 63.3 bits (147), Expect = 2e-10
Identities = 37/84 (44%), Positives = 51/84 (60%), Gaps = 5/84 (5%)
Frame = +2
Query: 233 LENILAPSPEIVPATLKRSVRTETVR-RGPVGRPDA----PARSAEDRSAYRRTPAAPGV 397
L L PEIVP+TL ++ R+ VR RG G P +++ +DRS YRR P A G+
Sbjct: 77 LRRYLHLPPEIVPSTLTQTTRSNAVRPRGGPGGPGGGFGGASKTDDDRSNYRRGPGAYGM 136
Query: 398 APHDKKADVGPGSADLEFKGGYGR 469
DKK DVG G+ +E++GG+GR
Sbjct: 137 ---DKKGDVGAGTGRVEYRGGFGR 157
>AF145693-1|AAD38668.2| 162|Drosophila melanogaster LD32148p
protein.
Length = 162
Score = 132 bits (319), Expect = 3e-31
Identities = 60/73 (82%), Positives = 65/73 (89%)
Frame = +3
Query: 12 MPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAW 191
+PK NRVAIYEYLFKEGV+VAKKD KH+EL+KIPNLQVIK MQSL SRG+VKEQFAW
Sbjct: 2 IPKANRVAIYEYLFKEGVLVAKKDSPIQKHSELDKIPNLQVIKVMQSLNSRGWVKEQFAW 61
Query: 192 RHFYWYLTNEGIE 230
RHFYW LTNEGIE
Sbjct: 62 RHFYWLLTNEGIE 74
Score = 63.3 bits (147), Expect = 2e-10
Identities = 37/84 (44%), Positives = 51/84 (60%), Gaps = 5/84 (5%)
Frame = +2
Query: 233 LENILAPSPEIVPATLKRSVRTETVR-RGPVGRPDA----PARSAEDRSAYRRTPAAPGV 397
L L PEIVP+TL ++ R+ VR RG G P +++ +DRS YRR P A G+
Sbjct: 76 LRRYLHLPPEIVPSTLTQTTRSNAVRPRGGPGGPGGGFGGASKTDDDRSNYRRGPGAYGM 135
Query: 398 APHDKKADVGPGSADLEFKGGYGR 469
DKK DVG G+ +E++GG+GR
Sbjct: 136 ---DKKGDVGAGTGRVEYRGGFGR 156
>BT003619-1|AAO39622.1| 1167|Drosophila melanogaster GH12052p protein.
Length = 1167
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +2
Query: 257 PEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTP 382
P AT+KRS+ R P G+P A A S RR+P
Sbjct: 947 PATQTATVKRSLSASRPLRMPNGQPLASAAPLRSASTVRRSP 988
>AE014296-1190|AAX52757.1| 1644|Drosophila melanogaster CG33556-PA
protein.
Length = 1644
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +2
Query: 257 PEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTP 382
P AT+KRS+ R P G+P A A S RR+P
Sbjct: 1424 PATQTATVKRSLSASRPLRMPNGQPLASAAPLRSASTVRRSP 1465
>AB061681-1|BAC76439.1| 1644|Drosophila melanogaster ah1644 protein.
Length = 1644
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +2
Query: 257 PEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTP 382
P AT+KRS+ R P G+P A A S RR+P
Sbjct: 1424 PATQTATVKRSLSASRPLRMPNGQPLASAAPLRSASTVRRSP 1465
>BT012663-1|AAT08469.1| 1057|Drosophila melanogaster RE66582p
protein.
Length = 1057
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 470 HVHSLP*IQDQLSLDQHQPFYHEVQHQGQQEY 375
H H +Q Q QHQ + + QHQ QQ++
Sbjct: 85 HQHQQQHMQQQQQQQQHQQQHQQQQHQQQQQH 116
>AE014296-1456|AAF50415.2| 1039|Drosophila melanogaster CG7015-PA
protein.
Length = 1039
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 470 HVHSLP*IQDQLSLDQHQPFYHEVQHQGQQEY 375
H H +Q Q QHQ + + QHQ QQ++
Sbjct: 85 HQHQQQHMQQQQQQQQHQQQHQQQQHQQQQQH 116
>M27431-1|AAA28868.1| 1896|Drosophila melanogaster protein (
D.melanogaster RpII215gene encoding RNA polymerase II,
largest subunit, completecds. ).
Length = 1896
Score = 27.9 bits (59), Expect = 8.4
Identities = 21/77 (27%), Positives = 32/77 (41%)
Frame = +2
Query: 254 SPEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPG 433
SP P T S + P P +PA S ++ + +P +P +P D PG
Sbjct: 1719 SPNYTPVTPSYSPTSPNYSASPQYSPASPAYS---QTGVKYSPTSPTYSPPSPSYDGSPG 1775
Query: 434 SADLEFKGGYGRGRPAS 484
S ++ G + PAS
Sbjct: 1776 SP--QYTPGSPQYSPAS 1790
>M19537-1|AAA28827.1| 408|Drosophila melanogaster RNA polymerase II
largest subunit protein.
Length = 408
Score = 27.9 bits (59), Expect = 8.4
Identities = 21/77 (27%), Positives = 32/77 (41%)
Frame = +2
Query: 254 SPEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPG 433
SP P T S + P P +PA S ++ + +P +P +P D PG
Sbjct: 238 SPNYTPVTPSYSPTSPNYSASPQYSPASPAYS---QTGVKYSPTSPTYSPPSPSYDGSPG 294
Query: 434 SADLEFKGGYGRGRPAS 484
S ++ G + PAS
Sbjct: 295 SP--QYTPGSPQYSPAS 309
>AY089555-1|AAL90293.1| 1429|Drosophila melanogaster LD43558p protein.
Length = 1429
Score = 27.9 bits (59), Expect = 8.4
Identities = 21/77 (27%), Positives = 32/77 (41%)
Frame = +2
Query: 254 SPEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPG 433
SP P T S + P P +PA S ++ + +P +P +P D PG
Sbjct: 1259 SPNYTPVTPSYSPTSPNYSASPQYSPASPAYS---QTGVKYSPTSPTYSPPSPSYDGSPG 1315
Query: 434 SADLEFKGGYGRGRPAS 484
S ++ G + PAS
Sbjct: 1316 SP--QYTPGSPQYSPAS 1330
>AY069546-1|AAL39691.1| 429|Drosophila melanogaster LD27370p
protein.
Length = 429
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 393 PGAAGVRLYADLSSAERAGASGRPTGPRRTVS 298
PG+A V A +SA ++G P G +R+VS
Sbjct: 269 PGSAAVLAPATTTSASSVSSNGAPMGGKRSVS 300
>AE014298-1637|AAF48057.1| 1887|Drosophila melanogaster CG1554-PA
protein.
Length = 1887
Score = 27.9 bits (59), Expect = 8.4
Identities = 21/77 (27%), Positives = 32/77 (41%)
Frame = +2
Query: 254 SPEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPG 433
SP P T S + P P +PA S ++ + +P +P +P D PG
Sbjct: 1717 SPNYTPVTPSYSPTSPNYSASPQYSPASPAYS---QTGVKYSPTSPTYSPPSPSYDGSPG 1773
Query: 434 SADLEFKGGYGRGRPAS 484
S ++ G + PAS
Sbjct: 1774 SP--QYTPGSPQYSPAS 1788
>AE014296-2787|AAF49424.2| 2224|Drosophila melanogaster CG9695-PA
protein.
Length = 2224
Score = 27.9 bits (59), Expect = 8.4
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +2
Query: 248 APSPEIVPATLKRSVRTETVRRGPVGRP-DAPARSAEDRSAYRRTPA-APGVAP 403
AP P + P + S R R+ +GRP D AE A + A AP VAP
Sbjct: 881 APPPLLPPPSQGSSARARPQRQASLGRPQDIYENKAEILQAQAQAQAQAPEVAP 934
>AE014296-2473|AAF49667.2| 429|Drosophila melanogaster CG6854-PA,
isoform A protein.
Length = 429
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 393 PGAAGVRLYADLSSAERAGASGRPTGPRRTVS 298
PG+A V A +SA ++G P G +R+VS
Sbjct: 269 PGSAAVLAPATTTSASSVSSNGAPMGGKRSVS 300
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,933,906
Number of Sequences: 53049
Number of extensions: 444344
Number of successful extensions: 1765
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1750
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1846255872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -