Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40231
(511 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003151-12|AAK18912.1| 149|Caenorhabditis elegans Ribosomal pr... 105 2e-23
Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical pr... 31 0.64
AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical ... 30 0.85
Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 29 2.0
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 29 2.0
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 29 2.0
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 29 2.0
Z81038-13|CAB02755.1| 971|Caenorhabditis elegans Hypothetical p... 29 2.6
U39653-3|AAL56623.1| 1702|Caenorhabditis elegans Prion-like-(q/n... 29 2.6
AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen prot... 29 2.6
Z71178-2|CAA94875.1| 297|Caenorhabditis elegans Hypothetical pr... 28 3.4
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z77662-14|CAI79239.1| 245|Caenorhabditis elegans Hypothetical p... 28 4.5
Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z46791-3|CAA86757.1| 323|Caenorhabditis elegans Hypothetical pr... 28 4.5
AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical ... 27 6.0
AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage... 27 6.0
AC024808-5|AAK29931.1| 789|Caenorhabditis elegans Hypothetical ... 27 6.0
Z82083-9|CAB04975.1| 635|Caenorhabditis elegans Hypothetical pr... 27 7.9
Z81503-6|CAB04115.1| 635|Caenorhabditis elegans Hypothetical pr... 27 7.9
AF078792-2|AAC26946.1| 512|Caenorhabditis elegans Hypothetical ... 27 7.9
>AF003151-12|AAK18912.1| 149|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 10 protein.
Length = 149
Score = 105 bits (251), Expect = 2e-23
Identities = 46/76 (60%), Positives = 57/76 (75%)
Frame = +3
Query: 6 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 185
M +PK + IYEYLF EGV VAKKD++A H +E + NL+VIK ++SL SR VKEQF
Sbjct: 1 MFIPKSHTKLIYEYLFNEGVTVAKKDFNAKTHPNIEGVSNLEVIKTLKSLASRELVKEQF 60
Query: 186 AWRHFYWYLTNEGIEY 233
AWRH+YWYLT+ GI Y
Sbjct: 61 AWRHYYWYLTDAGILY 76
Score = 35.9 bits (79), Expect = 0.017
Identities = 29/82 (35%), Positives = 36/82 (43%)
Frame = +2
Query: 233 LENILAPSPEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDK 412
L LA EIVPAT+K R V P A DR AYR +K
Sbjct: 77 LREYLALPAEIVPATIKTKPREIRVPHED-RAPRAAQGEKGDREAYRT----------EK 125
Query: 413 KADVGPGSADLEFKGGYGRGRP 478
+ GPG A + ++ G+GRG P
Sbjct: 126 VTEAGPGGAPV-YRAGFGRGAP 146
>Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical
protein C15A11.1 protein.
Length = 303
Score = 30.7 bits (66), Expect = 0.64
Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Frame = +2
Query: 248 APSPEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPG-VAPHDKKADV 424
AP P P + E GP G P + ED +A P PG P K +
Sbjct: 164 APGPNGQPGAAGTTSTNEPGSPGPAGPPGPAGPAGEDAAAPESPPGPPGPPGPPGKDGEA 223
Query: 425 G-PGS 436
G PG+
Sbjct: 224 GAPGA 228
>AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical
protein Y37H9A.3 protein.
Length = 792
Score = 30.3 bits (65), Expect = 0.85
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +2
Query: 314 GPVGRPDAPARSAEDRSAYRRTPAAPGVAP 403
G V RP APAR A + R PAAP P
Sbjct: 33 GRVSRPAAPARGAPPAARGRPAPAAPANVP 62
>Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 29.1 bits (62), Expect = 2.0
Identities = 19/53 (35%), Positives = 22/53 (41%)
Frame = +2
Query: 314 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRG 472
GP G P AP E S R+ ++PG P GP D GG G G
Sbjct: 146 GPDGNPGAPGNDGEAGSPGTRSISSPG--PAGPAGPPGPPGPDGAPGGGSGPG 196
>Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 29.1 bits (62), Expect = 2.0
Identities = 19/53 (35%), Positives = 22/53 (41%)
Frame = +2
Query: 314 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRG 472
GP G P AP E S R+ ++PG P GP D GG G G
Sbjct: 146 GPDGNPGAPGNDGEAGSPGTRSISSPG--PAGPAGPPGPPGPDGAPGGGSGPG 196
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 29.1 bits (62), Expect = 2.0
Identities = 19/56 (33%), Positives = 22/56 (39%)
Frame = +2
Query: 314 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGRPA 481
GP G P +PA + A PA P A GPG +GG G PA
Sbjct: 168 GPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPA 223
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 29.1 bits (62), Expect = 2.0
Identities = 19/56 (33%), Positives = 22/56 (39%)
Frame = +2
Query: 314 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGRPA 481
GP G P +PA + A PA P A GPG +GG G PA
Sbjct: 168 GPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPA 223
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 29.1 bits (62), Expect = 2.0
Identities = 19/56 (33%), Positives = 22/56 (39%)
Frame = +2
Query: 314 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGRPA 481
GP G P +PA + A PA P A GPG +GG G PA
Sbjct: 168 GPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPA 223
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 29.1 bits (62), Expect = 2.0
Identities = 19/56 (33%), Positives = 22/56 (39%)
Frame = +2
Query: 314 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGRPA 481
GP G P +PA + A PA P A GPG +GG G PA
Sbjct: 168 GPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPA 223
>Z81038-13|CAB02755.1| 971|Caenorhabditis elegans Hypothetical
protein C25A1.10a protein.
Length = 971
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 326 RPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLE 448
+ D+ + S++D + ++TPA P KKA+ S+D E
Sbjct: 432 KADSSSDSSDDEAPAKKTPAKAAPKPASKKAESSSDSSDDE 472
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +2
Query: 326 RPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFK 454
+ D+ + S++D + ++TPA P KKA+ S+D E K
Sbjct: 279 KADSSSDSSDDEAPAKKTPAKAAPKPVAKKAESSSDSSDDEKK 321
>U39653-3|AAL56623.1| 1702|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 65,
isoform a protein.
Length = 1702
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 449 IQDQLSLDQHQPFYHEVQHQGQQE 378
+Q+Q + Q Q F H+ QHQ QQE
Sbjct: 1183 MQEQSNEQQSQVFQHQHQHQAQQE 1206
>AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen protein
102 protein.
Length = 460
Score = 28.7 bits (61), Expect = 2.6
Identities = 23/79 (29%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
Frame = +2
Query: 248 APSPEIVPATLKRSVRTETVRRGPVGR--PDAPARSAEDRSAYRRTPAAPGVAPHDKKAD 421
A +PE PA + P G PDA A + E +A PAA G + A
Sbjct: 362 AAAPEAAPAEAAPAAEGAGGGAEPAGAAAPDAAAAAPEAAAAPEAAPAAEGAGGGAEPAG 421
Query: 422 VGPGSADLEFKGGYGRGRP 478
P +A +G G P
Sbjct: 422 AAPEAAAAAPEGAGGGEAP 440
>Z71178-2|CAA94875.1| 297|Caenorhabditis elegans Hypothetical
protein B0024.2 protein.
Length = 297
Score = 28.3 bits (60), Expect = 3.4
Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +2
Query: 308 RRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGG-YGRGRPAS 484
R GP GRP P R + + PA G A H + D PG K G GRG P +
Sbjct: 165 RPGPDGRPGQPGRKGNNGRPGQ--PAPQGNAGHPGR-DGEPGQPGNPGKDGRKGRGHPGT 221
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 314 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSAD 442
G +P A ++ A+D SAY+RT H +K + PG +D
Sbjct: 82 GDANKPRAWSKYAKDSSAYKRT--------HGEKEEANPGKSD 116
>Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.6 protein.
Length = 316
Score = 27.9 bits (59), Expect = 4.5
Identities = 19/56 (33%), Positives = 22/56 (39%)
Frame = +2
Query: 311 RGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGRP 478
+GP G P APA+ PA +P A PGS G GRG P
Sbjct: 153 KGPNGNPGAPAQGGGQGPPGPPGPAGSAGSPGQAGAPGNPGSPGK--SGQRGRGLP 206
>Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.5 protein.
Length = 316
Score = 27.9 bits (59), Expect = 4.5
Identities = 19/56 (33%), Positives = 22/56 (39%)
Frame = +2
Query: 311 RGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGRP 478
+GP G P APA+ PA +P A PGS G GRG P
Sbjct: 153 KGPNGNPGAPAQGGGQGPPGPPGPAGSAGSPGQAGAPGNPGSPGK--SGQRGRGLP 206
>Z77662-14|CAI79239.1| 245|Caenorhabditis elegans Hypothetical
protein F47B8.13 protein.
Length = 245
Score = 27.9 bits (59), Expect = 4.5
Identities = 21/70 (30%), Positives = 26/70 (37%)
Frame = +2
Query: 230 ILENILAPSPEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHD 409
+ E LAPSP+ PA S P G PA+ Y AAP AP +
Sbjct: 126 VAEPALAPSPDAAPAADGASYSAGAA--APAGGASYPAKKRRVARDYAEGGAAP-AAPAE 182
Query: 410 KKADVGPGSA 439
+ P A
Sbjct: 183 PAPEPAPAPA 192
>Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical
protein C29F4.1 protein.
Length = 299
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +2
Query: 314 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGS 436
GP G+P AP + D P P P AD PG+
Sbjct: 225 GPQGQPGAPGQPGHDGQPGAPGPKGPNGNPGAPGADGNPGA 265
>Z46791-3|CAA86757.1| 323|Caenorhabditis elegans Hypothetical
protein C09G5.4 protein.
Length = 323
Score = 27.9 bits (59), Expect = 4.5
Identities = 17/57 (29%), Positives = 23/57 (40%)
Frame = +2
Query: 311 RGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGRPA 481
+GP G+P P + A R PA AP A PG A + +G P+
Sbjct: 152 QGPNGQPGHPGQGGSQGPAGPRGPAGDAGAPGQVGAPGNPGQAGRGGQRSHGLPGPS 208
>AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical
protein Y39A1B.3 protein.
Length = 1499
Score = 27.5 bits (58), Expect = 6.0
Identities = 18/48 (37%), Positives = 21/48 (43%)
Frame = +2
Query: 269 PATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDK 412
P T+ S RT + R PA+S ED S PAAP A K
Sbjct: 1432 PTTMSGSSRTTSRAANSRRRAPPPAQSDEDDSDSDDAPAAPRSAARRK 1479
>AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage
compensation protein protein.
Length = 1455
Score = 27.5 bits (58), Expect = 6.0
Identities = 18/48 (37%), Positives = 21/48 (43%)
Frame = +2
Query: 269 PATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDK 412
P T+ S RT + R PA+S ED S PAAP A K
Sbjct: 1388 PTTMSGSSRTTSRAANSRRRAPPPAQSDEDDSDSDDAPAAPRSAARRK 1435
>AC024808-5|AAK29931.1| 789|Caenorhabditis elegans Hypothetical
protein Y53G8AM.8 protein.
Length = 789
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 302 TVRRGPVGRPDAPARSAEDRSAYRRTPAA 388
T+ PVGR ++ ARS ++ SA R+ P +
Sbjct: 8 TIENTPVGRGNSGARSHKEPSAKRKKPTS 36
>Z82083-9|CAB04975.1| 635|Caenorhabditis elegans Hypothetical
protein ZK1010.9 protein.
Length = 635
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 254 SPEIVPATLKR-SVRTETVRRGPVGRPDAPARSAEDRSAYR 373
+P ++P T SV+T+ +GPV P R AYR
Sbjct: 16 APSVIPPTAPTASVKTKAPTKGPVQPQKKPTTVDNGRRAYR 56
>Z81503-6|CAB04115.1| 635|Caenorhabditis elegans Hypothetical
protein ZK1010.9 protein.
Length = 635
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 254 SPEIVPATLKR-SVRTETVRRGPVGRPDAPARSAEDRSAYR 373
+P ++P T SV+T+ +GPV P R AYR
Sbjct: 16 APSVIPPTAPTASVKTKAPTKGPVQPQKKPTTVDNGRRAYR 56
>AF078792-2|AAC26946.1| 512|Caenorhabditis elegans Hypothetical
protein Y40D12A.2 protein.
Length = 512
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 90 APKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNE 221
AP ++ +PNL + ++S GY+ + FYWY+ +E
Sbjct: 16 APADQQITSLPNLT--EPLRSKHYAGYLSISDVKQLFYWYVESE 57
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,070,518
Number of Sequences: 27780
Number of extensions: 222087
Number of successful extensions: 901
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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