Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40231
         (511 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B) cont...   109   1e-24
At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S ...   105   2e-23
At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C) cont...   102   2e-22
At5g14380.1 68418.m01680 hydroxyproline-rich glycoprotein family...    29   2.4  
At1g01010.1 68414.m00001 no apical meristem (NAM) family protein...    28   3.2  
At5g36210.1 68418.m04365 expressed protein                             27   5.5  
At5g34930.1 68418.m04119 arogenate dehydrogenase identical to ar...    27   7.3  
At1g18380.1 68414.m02296 expressed protein                             27   9.7  

>At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B)
           contains similarity to 40S ribosomal protein S10
          Length = 180

 Score =  109 bits (261), Expect = 1e-24
 Identities = 45/76 (59%), Positives = 61/76 (80%)
 Frame = +3

Query: 6   MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 185
           M++ + NR  I +YLFKEGV+ AKKD++ P+H  +E +PNLQVIK MQS KS+ YV+E F
Sbjct: 1   MIISETNRREISKYLFKEGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETF 60

Query: 186 AWRHFYWYLTNEGIEY 233
           AW H+YW+LTNEGI++
Sbjct: 61  AWMHYYWFLTNEGIDF 76



 Score = 28.7 bits (61), Expect = 2.4
 Identities = 31/91 (34%), Positives = 36/91 (39%), Gaps = 6/91 (6%)
 Frame = +2

Query: 221 GY*ILENILAPSPEIVPATLKRSVRTETVRRGPVG-RPDAPARS-----AEDRSAYRRTP 382
           G   L   L    EIVPATLK+  +      G  G RP  P R        DR  YR  P
Sbjct: 73  GIDFLRTYLNLPSEIVPATLKKQQKPLGRPFGGGGDRPRGPPRGDGERRFGDRDGYRGGP 132

Query: 383 AAPGVAPHDKKADVGPGSADLEFKGGYGRGR 475
            + G   +  KA   P      F+GG G  R
Sbjct: 133 KSGG--EYGDKAG-APADYQPGFRGGAGGAR 160


>At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S
           ribosomal protein S10 - Lumbricus rubellus, PID:e1329701
          Length = 177

 Score =  105 bits (252), Expect = 2e-23
 Identities = 46/76 (60%), Positives = 60/76 (78%)
 Frame = +3

Query: 6   MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 185
           M++ + NR  I +YLFKEGV  AKKD++ PKH  ++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1   MIISENNRREICKYLFKEGVCFAKKDFNLPKHPLID-VPNLQVIKLMQSFKSKEYVRETF 59

Query: 186 AWRHFYWYLTNEGIEY 233
           AW H+YW+LTNEGIE+
Sbjct: 60  AWMHYYWFLTNEGIEF 75



 Score = 29.9 bits (64), Expect = 1.0
 Identities = 29/86 (33%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
 Frame = +2

Query: 221 GY*ILENILAPSPEIVPATLKRSVRT-ETVRRGPVG-RPDAPARSAEDRSAY-RRTPAAP 391
           G   L   L    ++VPATLK+S +       GP G R   P RS  DR  +  R     
Sbjct: 72  GIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRQRGPPRSDGDRPRFGDRDGYRG 131

Query: 392 GVAPHDKKADVGPGSADLEFKGGYGR 469
           G    D+K    P      F+GG GR
Sbjct: 132 GPRGGDEKGG-APADFQPSFQGGGGR 156


>At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C)
           contains similarity to 40S ribosomal protein S10
          Length = 179

 Score =  102 bits (244), Expect = 2e-22
 Identities = 45/76 (59%), Positives = 59/76 (77%)
 Frame = +3

Query: 6   MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 185
           M++ + NR  I +YLFKEGV  AKKD++  KH  ++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1   MIISEANRKEICKYLFKEGVCFAKKDFNLAKHPLID-VPNLQVIKLMQSFKSKEYVRETF 59

Query: 186 AWRHFYWYLTNEGIEY 233
           AW H+YW+LTNEGIE+
Sbjct: 60  AWMHYYWFLTNEGIEF 75



 Score = 26.6 bits (56), Expect = 9.7
 Identities = 30/95 (31%), Positives = 37/95 (38%), Gaps = 11/95 (11%)
 Frame = +2

Query: 221 GY*ILENILAPSPEIVPATLKRSVRT-ETVRRGPVG-RPDAPARSA------EDRSAYRR 376
           G   L   L    ++VPATLK+S +       GP G R   P           DR  YR 
Sbjct: 72  GIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRSRGPRHEGGDRPRFGDRDGYRA 131

Query: 377 TPAAPGVAPHDKKADVGPGSADLEFKG---GYGRG 472
            P A G    +K     P      F+G   G+GRG
Sbjct: 132 GPRAGGEFGGEKGG--APADYQPSFQGSGRGFGRG 164


>At5g14380.1 68418.m01680 hydroxyproline-rich glycoprotein family
           protein identical to gi|4775268|emb|CAB42531
          Length = 150

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 18/64 (28%), Positives = 24/64 (37%)
 Frame = +2

Query: 248 APSPEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVG 427
           +PSP   P   K    T      P   P A  +S+   S    +PAA G  P D  +   
Sbjct: 31  SPSPTAAPT--KAPTATTKAPSAPTKAPAAAPKSSSASSPKASSPAAEGPVPEDDYSASS 88

Query: 428 PGSA 439
           P  +
Sbjct: 89  PSDS 92


>At1g01010.1 68414.m00001 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           similar to NAC domain protein NAM GB: AAD17313
           GI:4325282 from [Arabidopsis thaliana]
          Length = 429

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +3

Query: 93  PKHTELEKIPNLQVIKAMQSLKSRGYVKEQ 182
           P HT ++ IP+L +I+ + + K++   K+Q
Sbjct: 333 PGHTRIDDIPSLNIIEPLHNYKAQEQPKQQ 362


>At5g36210.1 68418.m04365 expressed protein
          Length = 676

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +3

Query: 3   KMLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKH 101
           K++ P Q+R  IYE L K+G+ VA  +Y   +H
Sbjct: 603 KVVTPDQSR-KIYEALKKKGLPVALVEYEGEQH 634


>At5g34930.1 68418.m04119 arogenate dehydrogenase identical to
           arogenate dehydrogenase GI:16903098 from [Arabidopsis
           thaliana]; contains Pfam profile: PF02153: prephenate
           dehydrogenase
          Length = 640

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 98  LRCMIVFFGHHDSLFKEVLINSNTVLFGH 12
           LR  I+ FG++     E LI+   +LF H
Sbjct: 53  LRIAIIGFGNYGQFLAETLISQGHILFAH 81


>At1g18380.1 68414.m02296 expressed protein
          Length = 250

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 258 GEGARIFSSIQYPHWLGTSK 199
           G G R+F S  YP W G +K
Sbjct: 39  GSGHRVFESTTYPFWGGFNK 58


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,353,516
Number of Sequences: 28952
Number of extensions: 194089
Number of successful extensions: 554
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)