Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40230
(631 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ... 31 0.68
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ... 31 0.68
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ... 31 0.68
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein. 31 0.68
Z81540-2|CAB04403.1| 190|Caenorhabditis elegans Hypothetical pr... 29 2.1
AF125459-6|AAN60503.1| 219|Caenorhabditis elegans Hypothetical ... 29 3.6
AF125459-5|AAD12844.1| 345|Caenorhabditis elegans Hypothetical ... 29 3.6
U39644-2|AAA80360.2| 966|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z77666-12|CAJ43911.2| 896|Caenorhabditis elegans Hypothetical p... 27 8.4
Z77666-9|CAJ43912.1| 541|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z77666-8|CAJ43910.1| 493|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical pr... 27 8.4
>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
protein Y47H9C.4c protein.
Length = 1045
Score = 31.1 bits (67), Expect = 0.68
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 185 EISCACPETSCACPESSCLCP 247
E+SC C + SC+ CLCP
Sbjct: 600 ELSCPCSDASCSKQTGKCLCP 620
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +2
Query: 131 TCVSQNTGTCPESSCACPEISCACPETSCACP 226
TC G E SC C + SC+ C CP
Sbjct: 589 TCSKGKYGESCELSCPCSDASCSKQTGKCLCP 620
>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
protein Y47H9C.4b protein.
Length = 1070
Score = 31.1 bits (67), Expect = 0.68
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 185 EISCACPETSCACPESSCLCP 247
E+SC C + SC+ CLCP
Sbjct: 600 ELSCPCSDASCSKQTGKCLCP 620
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +2
Query: 131 TCVSQNTGTCPESSCACPEISCACPETSCACP 226
TC G E SC C + SC+ C CP
Sbjct: 589 TCSKGKYGESCELSCPCSDASCSKQTGKCLCP 620
>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
protein Y47H9C.4a protein.
Length = 1111
Score = 31.1 bits (67), Expect = 0.68
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 185 EISCACPETSCACPESSCLCP 247
E+SC C + SC+ CLCP
Sbjct: 600 ELSCPCSDASCSKQTGKCLCP 620
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +2
Query: 131 TCVSQNTGTCPESSCACPEISCACPETSCACP 226
TC G E SC C + SC+ C CP
Sbjct: 589 TCSKGKYGESCELSCPCSDASCSKQTGKCLCP 620
>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
Length = 1111
Score = 31.1 bits (67), Expect = 0.68
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 185 EISCACPETSCACPESSCLCP 247
E+SC C + SC+ CLCP
Sbjct: 600 ELSCPCSDASCSKQTGKCLCP 620
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +2
Query: 131 TCVSQNTGTCPESSCACPEISCACPETSCACP 226
TC G E SC C + SC+ C CP
Sbjct: 589 TCSKGKYGESCELSCPCSDASCSKQTGKCLCP 620
>Z81540-2|CAB04403.1| 190|Caenorhabditis elegans Hypothetical
protein F46B3.2 protein.
Length = 190
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Frame = +2
Query: 104 SCSFCKLY*TCVSQNTGTCPE--SSCACPEISCACPETSCACPESSCL 241
+C CK S CP S C + CP+T CP + C+
Sbjct: 62 TCGLCKKDPNVCSDTCTVCPMDMSPCETDQYQKICPKTCNVCPPAICV 109
>AF125459-6|AAN60503.1| 219|Caenorhabditis elegans Hypothetical
protein Y25C1A.8b protein.
Length = 219
Score = 28.7 bits (61), Expect = 3.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 170 SCACPEISCACPETSCACPES 232
+C E SC+C C+CPES
Sbjct: 99 ACDDSECSCSCSGGECSCPES 119
>AF125459-5|AAD12844.1| 345|Caenorhabditis elegans Hypothetical
protein Y25C1A.8a protein.
Length = 345
Score = 28.7 bits (61), Expect = 3.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 170 SCACPEISCACPETSCACPES 232
+C E SC+C C+CPES
Sbjct: 225 ACDDSECSCSCSGGECSCPES 245
>U39644-2|AAA80360.2| 966|Caenorhabditis elegans Hypothetical
protein T10E10.4 protein.
Length = 966
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 173 CACPEISCACPETSCACPESSCLCPQT 253
C+C ++S +CP TS C C C QT
Sbjct: 247 CSCSQVSSSCPGTS-QCQNKVC-CQQT 271
>Z77666-12|CAJ43911.2| 896|Caenorhabditis elegans Hypothetical
protein K08E7.5c protein.
Length = 896
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = +2
Query: 134 CVSQNTGTCPESSCACPEISCACPETSCAC-PESSCLCPQT 253
C + C + CP I C CP+ C P CL P T
Sbjct: 645 CCAPPAPCCLPTIPCCPPIPC-CPQPKICCQPAPVCLPPPT 684
>Z77666-9|CAJ43912.1| 541|Caenorhabditis elegans Hypothetical
protein K08E7.5d protein.
Length = 541
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = +2
Query: 134 CVSQNTGTCPESSCACPEISCACPETSCAC-PESSCLCPQT 253
C + C + CP I C CP+ C P CL P T
Sbjct: 290 CCAPPAPCCLPTIPCCPPIPC-CPQPKICCQPAPVCLPPPT 329
>Z77666-8|CAJ43910.1| 493|Caenorhabditis elegans Hypothetical
protein K08E7.5b protein.
Length = 493
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = +2
Query: 134 CVSQNTGTCPESSCACPEISCACPETSCAC-PESSCLCPQT 253
C + C + CP I C CP+ C P CL P T
Sbjct: 242 CCAPPAPCCLPTIPCCPPIPC-CPQPKICCQPAPVCLPPPT 281
>Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical protein
K08E7.5a protein.
Length = 1221
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = +2
Query: 134 CVSQNTGTCPESSCACPEISCACPETSCAC-PESSCLCPQT 253
C + C + CP I C CP+ C P CL P T
Sbjct: 970 CCAPPAPCCLPTIPCCPPIPC-CPQPKICCQPAPVCLPPPT 1009
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,367,260
Number of Sequences: 27780
Number of extensions: 81482
Number of successful extensions: 437
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -