Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40229
         (668 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    31   0.006
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    25   0.56 
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      23   2.3  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    23   3.0  
AF263514-1|AAF74206.1|  127|Tribolium castaneum cytochrome P450 ...    22   4.0  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   6.9  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   6.9  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   6.9  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   6.9  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   6.9  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    21   9.1  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   9.1  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   9.1  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   9.1  

>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 31.5 bits (68), Expect = 0.006
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = +3

Query: 159 PLNPKANREKMTQIMFETFNT-PAMYVAIQAVLRCTRPVVPPVS-CWTPATVSPTPCPST 332
           PL    NR    Q  +      PAM V  +  LRC   VVPP   C  P+T+ P P    
Sbjct: 165 PLGKSCNRYWQCQGGYPRLQRCPAMLVFDRRSLRC---VVPPTEDCDVPSTIPPPPPEED 221

Query: 333 KDTHSP 350
            D++ P
Sbjct: 222 DDSNIP 227


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 57  IVTNWDDMEKIWHHTFYNELRVAPEEHPVLLT 152
           +VT+W + E+I++     +L V     PV+LT
Sbjct: 158 VVTDWVNFERIYYKLTKKKLSVFFGNKPVILT 189


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 437 TTAEREIVRDIKEKLCYVALDFEQKWP 517
           T A+R + +  KEKL  +A+    +WP
Sbjct: 4   TGADRLMTQRCKEKLNTLAISVMNQWP 30


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +2

Query: 173 GQQREDDPDHVRNIQHARHVRRHPSRA 253
           GQ    DP+ V   +   H+  HP +A
Sbjct: 903 GQYTTKDPNEVTCDEEEGHISYHPDKA 929


>AF263514-1|AAF74206.1|  127|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 127

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 26  PDPQIPHRTRNRH 64
           PD  +P RT NRH
Sbjct: 110 PDNFLPERTANRH 122


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +1

Query: 316 HRAHLRRIRTPPRHPASGLSRSRP 387
           H+A +R +  PP+       RS P
Sbjct: 62  HKAPIRPVALPPKREIPSPKRSSP 85


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -1

Query: 95  MPNLLHVIPVSDDSVFD 45
           +P++  +IP  DD+  D
Sbjct: 355 LPDISEIIPTGDDTTMD 371


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -1

Query: 95  MPNLLHVIPVSDDSVFD 45
           +P++  +IP  DD+  D
Sbjct: 355 LPDISEIIPTGDDTTMD 371


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -1

Query: 95  MPNLLHVIPVSDDSVFD 45
           +P++  +IP  DD+  D
Sbjct: 355 LPDISEIIPTGDDTTMD 371


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -1

Query: 95  MPNLLHVIPVSDDSVFD 45
           +P++  +IP  DD+  D
Sbjct: 355 LPDISEIIPTGDDTTMD 371


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +3

Query: 270 VVPP-VSCWTPATVSPTPCPS-TKDTHSPTPS 359
           V+PP  +    AT   +P    TKD  SPTPS
Sbjct: 22  VIPPHYNIHHGATPPQSPNQQYTKDCSSPTPS 53


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 497 DFEQKWPPLHPAAPSRSLTNFPTVRSSLSE 586
           DFE     ++   P+++ TN PT R    E
Sbjct: 357 DFELLIKGVYQVNPTKTRTNLPTHRHPQDE 386


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = +2

Query: 158 SPQPQGQQREDDPDHVRNIQHARHVRRHPSRAPLY 262
           +PQ Q    ++ P+    I H  +V+ +    P Y
Sbjct: 354 NPQQQYYYNKNHPNSENYINHQNYVQGYQGEHPNY 388


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = +2

Query: 158 SPQPQGQQREDDPDHVRNIQHARHVRRHPSRAPLY 262
           +PQ Q    ++ P+    I H  +V+ +    P Y
Sbjct: 302 NPQQQYYYNKNHPNSENYINHQNYVQGYQGEHPNY 336


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,640
Number of Sequences: 336
Number of extensions: 4010
Number of successful extensions: 15
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17385535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)