Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40229
(668 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 173 2e-44
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 110 2e-25
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 108 8e-25
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 97 3e-21
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 63 3e-11
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 59 7e-10
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 58 9e-10
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 52 1e-07
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 38 0.002
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.086
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 31 0.20
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 27 1.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.4
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 27 3.2
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 4.3
SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr... 25 7.5
SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet... 25 9.9
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 9.9
SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces ... 25 9.9
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe... 25 9.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 173 bits (421), Expect = 2e-44
Identities = 78/84 (92%), Positives = 80/84 (95%)
Frame = +3
Query: 3 EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 182
EAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NR
Sbjct: 57 EAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNR 116
Query: 183 EKMTQIMFETFNTPAMYVAIQAVL 254
EKMTQI+FETFN PA YVAIQAVL
Sbjct: 117 EKMTQIIFETFNAPAFYVAIQAVL 140
Score = 172 bits (419), Expect = 3e-44
Identities = 85/98 (86%), Positives = 90/98 (91%)
Frame = +2
Query: 257 LYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFT 436
LYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKIL ERGY+F+
Sbjct: 142 LYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTFS 201
Query: 437 TTAEREIVRDIKEKLCYVALDFEQKWPPLHPAAPSRSL 550
TTAEREIVRDIKEKLCYVALDFEQ+ L AA S SL
Sbjct: 202 TTAEREIVRDIKEKLCYVALDFEQE---LQTAAQSSSL 236
Score = 86.2 bits (204), Expect = 4e-18
Identities = 41/49 (83%), Positives = 43/49 (87%)
Frame = +1
Query: 508 EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGI 654
E+ TAA SSSLEKSYELPDGQVITIGNERFR PEALFQPS LG+E GI
Sbjct: 226 ELQTAAQSSSLEKSYELPDGQVITIGNERFRAPEALFQPSALGLENAGI 274
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 110 bits (265), Expect = 2e-25
Identities = 52/107 (48%), Positives = 74/107 (69%), Gaps = 3/107 (2%)
Frame = +2
Query: 257 LYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFT 436
LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI + ++ GRD+TDYL L + G+
Sbjct: 147 LYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKSGHELV 206
Query: 437 TTAEREIVRDIKEKLCYVALDFE---QKWPPLHPAAPSRSLTNFPTV 568
++AE+EIVR+IKEK CYVA DF + W P + L + T+
Sbjct: 207 SSAEKEIVREIKEKCCYVASDFRSEIESWTEHKPQIHTYQLPDNQTI 253
Score = 92.7 bits (220), Expect = 4e-20
Identities = 41/85 (48%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKAN 179
EAQ+ RG+L ++ PIE GI+ NW DME+IW + + ++ L PEEHP+LLTE PL N
Sbjct: 61 EAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRN 120
Query: 180 REKMTQIMFETFNTPAMYVAIQAVL 254
+EK+ + +ET N PA+ ++Q VL
Sbjct: 121 KEKIAEYFYETLNVPALSFSLQPVL 145
Score = 48.0 bits (109), Expect = 1e-06
Identities = 21/51 (41%), Positives = 29/51 (56%)
Frame = +1
Query: 502 RAEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGI 654
R+E+ + +Y+LPD Q IT+G E F PE LF P +G EA G+
Sbjct: 229 RSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVLFNPEMMGSEASGL 279
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 108 bits (259), Expect = 8e-25
Identities = 47/83 (56%), Positives = 63/83 (75%)
Frame = +2
Query: 257 LYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFT 436
LYA G ++G+V+DSGDGV+H VP+YE L H + RLD+AGRD T YL+ +L +GY+F
Sbjct: 142 LYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLRKGYAFN 201
Query: 437 TTAEREIVRDIKEKLCYVALDFE 505
TA+ E VR++KEKLCYV+ D E
Sbjct: 202 RTADFETVREMKEKLCYVSYDLE 224
Score = 97.5 bits (232), Expect = 2e-21
Identities = 40/84 (47%), Positives = 63/84 (75%)
Frame = +3
Query: 3 EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 182
EA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANR
Sbjct: 57 EAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANR 116
Query: 183 EKMTQIMFETFNTPAMYVAIQAVL 254
EKM + MFE + +YVAIQAVL
Sbjct: 117 EKMCETMFERYGFGGVYVAIQAVL 140
Score = 53.6 bits (123), Expect = 2e-08
Identities = 22/52 (42%), Positives = 34/52 (65%)
Frame = +1
Query: 499 LRAEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGI 654
L + + ++ L ++Y LPDG+VI +G+ER+ CPE LFQP +G E G+
Sbjct: 223 LELDHKLSEETTVLMRNYTLPDGRVIKVGSERYECPECLFQPHLVGSEQPGL 274
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 96.7 bits (230), Expect = 3e-21
Identities = 40/75 (53%), Positives = 51/75 (68%)
Frame = +3
Query: 30 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 209
+L YPI HG + NWD ME+ W + + LR PE+H LLTE PLNP NRE +IMFE
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFE 148
Query: 210 TFNTPAMYVAIQAVL 254
+FN +Y+A+QAVL
Sbjct: 149 SFNCAGLYIAVQAVL 163
Score = 65.7 bits (153), Expect = 6e-12
Identities = 35/81 (43%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Frame = +2
Query: 278 TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY--SFTTTAER 451
TG V+DSGDGV+H +P+ EGY + +I + LAGRD+T ++ +L +R S TAER
Sbjct: 180 TGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER 239
Query: 452 EIVRDIKEKLCYVALDFEQKW 514
IKE+ CYV D +++
Sbjct: 240 -----IKEECCYVCPDIVKEF 255
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 63.3 bits (147), Expect = 3e-11
Identities = 29/73 (39%), Positives = 41/73 (56%)
Frame = +3
Query: 27 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 206
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 207 ETFNTPAMYVAIQ 245
E+ PA Y+A Q
Sbjct: 123 ESLRCPATYLAKQ 135
Score = 33.9 bits (74), Expect = 0.021
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +1
Query: 499 LRAEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQP 624
L +++ ++ ++ E +E PDG + G ER++ PE LF P
Sbjct: 247 LISDVPFSSETTIAESEFEFPDGSRMMFGAERYQIPEHLFVP 288
Score = 30.7 bits (66), Expect = 0.20
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +2
Query: 260 YASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY 427
+ASG+ T ++D G S IY+G+ L +G + D L + L ++ +
Sbjct: 141 FASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNAINDILAQTLRDKNF 196
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 58.8 bits (136), Expect = 7e-10
Identities = 25/70 (35%), Positives = 42/70 (60%)
Frame = +3
Query: 42 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 221
P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE +N
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNA 144
Query: 222 PAMYVAIQAV 251
P++ I +
Sbjct: 145 PSVAYGIDGL 154
Score = 37.1 bits (82), Expect = 0.002
Identities = 19/76 (25%), Positives = 35/76 (46%)
Frame = +2
Query: 275 TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAERE 454
++GIVL+ G+ SH +P+ G + R+ G + YL+K+ + SF
Sbjct: 165 SSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSSYLLKLFQIKYPSFPIKMLPS 224
Query: 455 IVRDIKEKLCYVALDF 502
+ C+V+ D+
Sbjct: 225 QAELLMHDHCHVSSDY 240
Score = 28.3 bits (60), Expect = 1.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 589 ERFRCPEALFQPSFLGMEACGI 654
E+ R PE +F PS +G++ GI
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGI 615
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 58.4 bits (135), Expect = 9e-10
Identities = 28/87 (32%), Positives = 51/87 (58%)
Frame = +2
Query: 284 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR 463
+V+DSG +H +P+ + A+ R+D+ G+ LT+YL ++++ R Y+ E IV
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNM--MEETYIVN 216
Query: 464 DIKEKLCYVALDFEQKWPPLHPAAPSR 544
+IKE +CYV+ +F++ H S+
Sbjct: 217 EIKESVCYVSQNFKEDMEICHEKPRSK 243
Score = 35.9 bits (79), Expect = 0.005
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1
Query: 568 QVITIGNERFRCPEALFQPSFLGMEACGIP 657
QV+ + NERF PE LF PS + + GIP
Sbjct: 272 QVLNLSNERFMIPELLFSPSDIEIREAGIP 301
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 51.6 bits (118), Expect = 1e-07
Identities = 21/67 (31%), Positives = 39/67 (58%)
Frame = +3
Query: 51 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAM 230
+GI+ +W+ W +L+V P E+ +++TE NP++ R+++ + FE + PA
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133
Query: 231 YVAIQAV 251
Y+ QAV
Sbjct: 134 YLTKQAV 140
Score = 39.5 bits (88), Expect = 4e-04
Identities = 19/37 (51%), Positives = 21/37 (56%)
Frame = +1
Query: 520 AASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSF 630
A +SS K +E PDG G ERFR E LF PSF
Sbjct: 271 AKASSRNPKPFEFPDGVTHKFGQERFRISEILFNPSF 307
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 37.5 bits (83), Expect = 0.002
Identities = 23/73 (31%), Positives = 36/73 (49%)
Frame = +2
Query: 257 LYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFT 436
LYA G G+V+D G + PI +G + A +L L GR +T +L +L E +
Sbjct: 188 LYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYMTQHLQNLLRESLPTLK 247
Query: 437 TTAEREIVRDIKE 475
++ + DI E
Sbjct: 248 SSGQYVSKEDITE 260
Score = 35.5 bits (78), Expect = 0.007
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Frame = +3
Query: 42 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 209
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 210 TFNTPAMYVAIQAVL 254
P +A + ++
Sbjct: 172 ECQVPGFTIAYEPLM 186
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.086
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +3
Query: 102 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 245
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 30.7 bits (66), Expect = 0.20
Identities = 13/58 (22%), Positives = 30/58 (51%)
Frame = +2
Query: 260 YASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 433
+ +G + V+D G + + EG +P++ ++++ G D+T MK+L + +
Sbjct: 286 FGAGMSAACVVDMGAQKTSISCVEEGVVVPNSRIKINYGGDDITLLFMKLLMRSHFPY 343
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 27.5 bits (58), Expect = 1.8
Identities = 25/72 (34%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Frame = +1
Query: 211 HST-RPPCTSPS---KPCSAVRVRSYHRYRAGLRRRCLPHRAHLRRIRTPPRHPASGLSR 378
HST R TSP+ + R RS HR+ G RR P+R HL R RH +
Sbjct: 121 HSTSRSRSTSPANRHRRKEKERTRSNHRH--GSHRRHEPYRTHLSRHH---RHSTTNYHS 175
Query: 379 SRPHRLPHEDPH 414
R R H
Sbjct: 176 KRDDRYERRREH 187
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 267 PVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 359
P VP S P+ P P PS++ P PS
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +3
Query: 276 PPVSCWTPATVSPTPCPSTKDTHSP 350
PPV+C TP P C K H P
Sbjct: 631 PPVACGTPIPDCPYLCVLPKSCHHP 655
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 4.3
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 144 LLTEAPLNPKANREKMTQIMFETFN 218
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 431
Score = 25.4 bits (53), Expect = 7.5
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Frame = +2
Query: 374 AGRDLTDYLMKILTERGYSFTTTA---EREIVRDIKEKLCYVALDFEQKWPPLHPAAPSR 544
+ DL D++ K +RG F+ A E++ KL Y +D +W A+ +
Sbjct: 298 SSEDLLDWIWKY-NKRGSIFSHVAYNSRHELIH--AAKLFY--MDVASEWSSSDMASLND 352
Query: 545 SLTNFPTVRSSLSETKDSVAQRLSS 619
SL + P+V + T++ + + L S
Sbjct: 353 SLYSHPSVSKQSTWTEEELKEELES 377
>SPAC29A4.20 |||RNA polymerase II elongator complex, histone
acetyltransferase subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 544
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Frame = +1
Query: 328 LRRIRTPPRHPASGLS----RSRPHRLPH 402
+R++R P ASG++ +PHR PH
Sbjct: 70 MRKLRAKPVRTASGIAVVAVMCKPHRCPH 98
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +3
Query: 261 TRPVVPPVSCWTPATVSPTPCPSTKDT 341
T P S TPA V P P PST T
Sbjct: 833 TSPYATTSSHITPADVHPLPPPSTSTT 859
>SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 512
Score = 25.0 bits (52), Expect = 9.9
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = -2
Query: 352 VGECVSFVDGHGVGDTVAGVQHDTGGTTGRVQRST--AWMATYMAGVLNVSNMIWVIF 185
+G CVSF + G ++A Q T G G ++ +A Y G N+ +++ F
Sbjct: 86 LGLCVSFFQWYFWGYSLAFSQTGTSGYIGNLRHFAFIRTLADYSPGSNNIPELVFANF 143
>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 25.0 bits (52), Expect = 9.9
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +3
Query: 237 AIQAVLRCTRPVVPPVSC 290
A+Q+ LR + P+V P+ C
Sbjct: 135 AVQSTLRLSEPLVSPIKC 152
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,998,877
Number of Sequences: 5004
Number of extensions: 63902
Number of successful extensions: 280
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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