Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40229
(668 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 182 2e-46
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 182 2e-46
SB_56| Best HMM Match : Actin (HMM E-Value=0) 182 2e-46
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 182 2e-46
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 182 2e-46
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 176 2e-44
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 169 2e-42
SB_54| Best HMM Match : Actin (HMM E-Value=0) 138 5e-33
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 116 1e-26
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 107 1e-23
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 81 1e-15
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 78 6e-15
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 73 2e-13
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 64 1e-10
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 46 2e-05
SB_22949| Best HMM Match : rve (HMM E-Value=1.2e-19) 34 0.091
SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25) 33 0.21
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21
SB_58386| Best HMM Match : rve (HMM E-Value=8.6e-26) 33 0.21
SB_37416| Best HMM Match : ResIII (HMM E-Value=1.2) 33 0.21
SB_39041| Best HMM Match : rve (HMM E-Value=2.3e-10) 32 0.49
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.64
SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.85
SB_33253| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_10843| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_28997| Best HMM Match : rve (HMM E-Value=2.3e-10) 30 2.0
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 30 2.0
SB_51831| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_38098| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_20279| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_55327| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_48528| Best HMM Match : Extensin_2 (HMM E-Value=1) 29 3.4
SB_45078| Best HMM Match : ABC_tran (HMM E-Value=2.6e-36) 29 3.4
SB_34754| Best HMM Match : TSP_1 (HMM E-Value=7.4e-12) 29 3.4
SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_31260| Best HMM Match : rve (HMM E-Value=5.2e-25) 29 3.4
SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3) 29 3.4
SB_46063| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00015) 29 4.5
SB_30721| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_24603| Best HMM Match : GatB_Yqey (HMM E-Value=0.7) 29 4.5
SB_11339| Best HMM Match : TGF_beta (HMM E-Value=5.60519e-45) 29 4.5
SB_6983| Best HMM Match : rve (HMM E-Value=0.011) 29 4.5
SB_22791| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_43404| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42) 28 6.0
SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_24841| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_10665| Best HMM Match : PT (HMM E-Value=6.2) 28 6.0
SB_12136| Best HMM Match : ResIII (HMM E-Value=0.24) 28 6.0
SB_8145| Best HMM Match : RNA_pol_Rpb2_6 (HMM E-Value=0) 28 6.0
SB_51082| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_36584| Best HMM Match : ResIII (HMM E-Value=0.95) 28 7.9
SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_23869| Best HMM Match : rve (HMM E-Value=2.2e-16) 28 7.9
SB_474| Best HMM Match : dsrm (HMM E-Value=3.2e-20) 28 7.9
SB_40412| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_2065| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 182 bits (444), Expect = 2e-46
Identities = 83/84 (98%), Positives = 84/84 (100%)
Frame = +3
Query: 3 EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 182
EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR
Sbjct: 58 EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 117
Query: 183 EKMTQIMFETFNTPAMYVAIQAVL 254
EKMTQIMFETFN+PAMYVAIQAVL
Sbjct: 118 EKMTQIMFETFNSPAMYVAIQAVL 141
Score = 176 bits (428), Expect = 2e-44
Identities = 86/98 (87%), Positives = 91/98 (92%)
Frame = +2
Query: 257 LYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFT 436
LYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKILTERGYSFT
Sbjct: 143 LYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIIRLDLAGRDLTDYLMKILTERGYSFT 202
Query: 437 TTAEREIVRDIKEKLCYVALDFEQKWPPLHPAAPSRSL 550
TTAEREIVRDIKEKLCYVALDFEQ+ + AA S SL
Sbjct: 203 TTAEREIVRDIKEKLCYVALDFEQE---METAASSSSL 237
Score = 97.5 bits (232), Expect = 9e-21
Identities = 45/49 (91%), Positives = 47/49 (95%)
Frame = +1
Query: 508 EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGI 654
EM TAASSSSLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGME+ GI
Sbjct: 227 EMETAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGI 275
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 182 bits (444), Expect = 2e-46
Identities = 83/84 (98%), Positives = 84/84 (100%)
Frame = +3
Query: 3 EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 182
EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR
Sbjct: 57 EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 116
Query: 183 EKMTQIMFETFNTPAMYVAIQAVL 254
EKMTQIMFETFN+PAMYVAIQAVL
Sbjct: 117 EKMTQIMFETFNSPAMYVAIQAVL 140
Score = 172 bits (419), Expect = 2e-43
Identities = 86/98 (87%), Positives = 90/98 (91%)
Frame = +2
Query: 257 LYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFT 436
LYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFT
Sbjct: 142 LYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFT 201
Query: 437 TTAEREIVRDIKEKLCYVALDFEQKWPPLHPAAPSRSL 550
TTAEREIVRDIKEKL YVALDFEQ+ + AA S SL
Sbjct: 202 TTAEREIVRDIKEKLAYVALDFEQE---MATAAASSSL 236
Score = 98.3 bits (234), Expect = 5e-21
Identities = 45/49 (91%), Positives = 48/49 (97%)
Frame = +1
Query: 508 EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGI 654
EMATAA+SSSLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGME+ GI
Sbjct: 226 EMATAAASSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGI 274
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 182 bits (444), Expect = 2e-46
Identities = 83/84 (98%), Positives = 84/84 (100%)
Frame = +3
Query: 3 EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 182
EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR
Sbjct: 57 EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 116
Query: 183 EKMTQIMFETFNTPAMYVAIQAVL 254
EKMTQIMFETFN+PAMYVAIQAVL
Sbjct: 117 EKMTQIMFETFNSPAMYVAIQAVL 140
Score = 177 bits (430), Expect = 9e-45
Identities = 87/98 (88%), Positives = 91/98 (92%)
Frame = +2
Query: 257 LYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFT 436
LYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFT
Sbjct: 142 LYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFT 201
Query: 437 TTAEREIVRDIKEKLCYVALDFEQKWPPLHPAAPSRSL 550
TTAEREIVRDIKEKLCYVALDFEQ+ + AA S SL
Sbjct: 202 TTAEREIVRDIKEKLCYVALDFEQE---MQTAASSSSL 236
Score = 97.5 bits (232), Expect = 9e-21
Identities = 45/49 (91%), Positives = 47/49 (95%)
Frame = +1
Query: 508 EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGI 654
EM TAASSSSLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGME+ GI
Sbjct: 226 EMQTAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGI 274
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 182 bits (444), Expect = 2e-46
Identities = 83/84 (98%), Positives = 84/84 (100%)
Frame = +3
Query: 3 EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 182
EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR
Sbjct: 58 EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 117
Query: 183 EKMTQIMFETFNTPAMYVAIQAVL 254
EKMTQIMFETFN+PAMYVAIQAVL
Sbjct: 118 EKMTQIMFETFNSPAMYVAIQAVL 141
Score = 176 bits (428), Expect = 2e-44
Identities = 87/98 (88%), Positives = 91/98 (92%)
Frame = +2
Query: 257 LYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFT 436
LYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFT
Sbjct: 143 LYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFT 202
Query: 437 TTAEREIVRDIKEKLCYVALDFEQKWPPLHPAAPSRSL 550
TTAEREIVRDIKEKLCYVALDFEQ+ + AA S SL
Sbjct: 203 TTAEREIVRDIKEKLCYVALDFEQE---MTTAASSSSL 237
Score = 97.9 bits (233), Expect = 7e-21
Identities = 45/49 (91%), Positives = 47/49 (95%)
Frame = +1
Query: 508 EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGI 654
EM TAASSSSLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGME+ GI
Sbjct: 227 EMTTAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGI 275
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 182 bits (444), Expect = 2e-46
Identities = 83/84 (98%), Positives = 84/84 (100%)
Frame = +3
Query: 3 EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 182
EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR
Sbjct: 58 EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 117
Query: 183 EKMTQIMFETFNTPAMYVAIQAVL 254
EKMTQIMFETFN+PAMYVAIQAVL
Sbjct: 118 EKMTQIMFETFNSPAMYVAIQAVL 141
Score = 94.7 bits (225), Expect = 6e-20
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +1
Query: 508 EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGI 654
EM TAASSSS+EKSYELPDGQVITIGNERFRCPEAL QPSFLGME+ GI
Sbjct: 200 EMQTAASSSSIEKSYELPDGQVITIGNERFRCPEALLQPSFLGMESSGI 248
Score = 72.9 bits (171), Expect = 2e-13
Identities = 51/98 (52%), Positives = 57/98 (58%)
Frame = +2
Query: 257 LYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFT 436
LYASGRTTGIV+DS G + H + I ERGYSFT
Sbjct: 143 LYASGRTTGIVMDS------------GDGVSHTV---------------PIYEERGYSFT 175
Query: 437 TTAEREIVRDIKEKLCYVALDFEQKWPPLHPAAPSRSL 550
TTAEREIVRDIKEKLCYVALDFEQ+ + AA S S+
Sbjct: 176 TTAEREIVRDIKEKLCYVALDFEQE---MQTAASSSSI 210
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 176 bits (428), Expect = 2e-44
Identities = 86/98 (87%), Positives = 91/98 (92%)
Frame = +2
Query: 257 LYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFT 436
LYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKILTERGYSFT
Sbjct: 105 LYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIIRLDLAGRDLTDYLMKILTERGYSFT 164
Query: 437 TTAEREIVRDIKEKLCYVALDFEQKWPPLHPAAPSRSL 550
TTAEREIVRDIKEKLCYVALDFEQ+ + AA S SL
Sbjct: 165 TTAEREIVRDIKEKLCYVALDFEQE---MQTAASSSSL 199
Score = 97.5 bits (232), Expect = 9e-21
Identities = 45/49 (91%), Positives = 47/49 (95%)
Frame = +1
Query: 508 EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGI 654
EM TAASSSSLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGME+ GI
Sbjct: 189 EMQTAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGI 237
Score = 69.7 bits (163), Expect = 2e-12
Identities = 31/34 (91%), Positives = 31/34 (91%)
Frame = +3
Query: 3 EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 104
EAQSKRGILTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 57 EAQSKRGILTLKYPIEHGIVTNWDDMEKIMFETF 90
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/26 (76%), Positives = 23/26 (88%)
Frame = +3
Query: 177 NREKMTQIMFETFNTPAMYVAIQAVL 254
N + M +IMFETFN+PAMYVAIQAVL
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVL 103
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 169 bits (410), Expect = 2e-42
Identities = 78/85 (91%), Positives = 82/85 (96%)
Frame = +2
Query: 257 LYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFT 436
LYASGRTTG+V DSGDGVSH VPIYEGYALPHAILRLDLAGRDLTDYLMK++TERGYSFT
Sbjct: 21 LYASGRTTGVVFDSGDGVSHNVPIYEGYALPHAILRLDLAGRDLTDYLMKLMTERGYSFT 80
Query: 437 TTAEREIVRDIKEKLCYVALDFEQK 511
TTAEREIVRDIKEKLCYVALDF Q+
Sbjct: 81 TTAEREIVRDIKEKLCYVALDFYQE 105
Score = 36.7 bits (81), Expect = 0.017
Identities = 16/19 (84%), Positives = 18/19 (94%)
Frame = +3
Query: 198 IMFETFNTPAMYVAIQAVL 254
IMFE FN+PA+YVAIQAVL
Sbjct: 1 IMFEAFNSPAVYVAIQAVL 19
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 138 bits (333), Expect = 5e-33
Identities = 59/85 (69%), Positives = 74/85 (87%)
Frame = +2
Query: 257 LYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFT 436
LYASGRTTG V D GDGVSHTVP+Y+GY LPHA R+DLAGRDLT YL +++TERGYSF
Sbjct: 2187 LYASGRTTGTVFDCGDGVSHTVPVYDGYWLPHATQRIDLAGRDLTHYLQRLVTERGYSFQ 2246
Query: 437 TTAEREIVRDIKEKLCYVALDFEQK 511
+TAE++I+RD+KE LCY A+D+E++
Sbjct: 2247 STAEQQIIRDLKETLCYCAMDYERE 2271
Score = 86.2 bits (204), Expect = 2e-17
Identities = 38/57 (66%), Positives = 47/57 (82%)
Frame = +3
Query: 84 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVL 254
K+W H F ++LRV E+ PVLLTEAPLNPK NRE+M Q+MFE+FN P MYVA+QAV+
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVM 2185
Score = 55.2 bits (127), Expect = 5e-08
Identities = 27/49 (55%), Positives = 31/49 (63%)
Frame = +1
Query: 508 EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGI 654
E+ A +S E Y LPDGQ I IG+ERFR E LFQPS LG + GI
Sbjct: 2271 ELKEAETSDDCEAPYMLPDGQSIRIGSERFRAAEPLFQPSLLGRDIDGI 2319
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 116 bits (280), Expect = 1e-26
Identities = 51/85 (60%), Positives = 66/85 (77%)
Frame = +2
Query: 257 LYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFT 436
LYA G TG+V+DSGDGV+H P+YEG+ALPH RLD+AGRD+T YL+K++ RGY+F
Sbjct: 146 LYAQGLLTGVVIDSGDGVTHICPVYEGFALPHLTRRLDIAGRDITKYLIKLMLLRGYAFN 205
Query: 437 TTAEREIVRDIKEKLCYVALDFEQK 511
TA+ E VR +KEKLCYV + EQ+
Sbjct: 206 HTADFETVRMMKEKLCYVGYNIEQE 230
Score = 95.1 bits (226), Expect = 5e-20
Identities = 42/85 (49%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNPKAN 179
EA R +L + YP+++GIV NWDDM+ +W +TF +++ + P VLLTE PLNP N
Sbjct: 60 EASQLRYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKN 119
Query: 180 REKMTQIMFETFNTPAMYVAIQAVL 254
REKM ++MFE + +Y+AIQAVL
Sbjct: 120 REKMIEVMFENYQFEGVYIAIQAVL 144
Score = 51.2 bits (117), Expect = 7e-07
Identities = 21/52 (40%), Positives = 31/52 (59%)
Frame = +1
Query: 499 LRAEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGI 654
+ E A ++ L + Y LPDG+V+ + ERF PEALFQP + +E G+
Sbjct: 227 IEQEQKLALETTVLVEQYTLPDGRVVKLSGERFEAPEALFQPHLINVEGVGV 278
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 107 bits (256), Expect = 1e-23
Identities = 46/74 (62%), Positives = 64/74 (86%)
Frame = +2
Query: 257 LYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFT 436
LYA+GRTTG+VLD+GDGVSH+VPIYEG+A+PH+I+R D+AGRD++ YL +L + G+ F
Sbjct: 168 LYATGRTTGVVLDAGDGVSHSVPIYEGFAMPHSIMRTDIAGRDVSRYLRLLLRKEGHCFH 227
Query: 437 TTAEREIVRDIKEK 478
+++E EIVR IKE+
Sbjct: 228 SSSELEIVRTIKEE 241
Score = 68.1 bits (159), Expect = 6e-12
Identities = 27/41 (65%), Positives = 36/41 (87%)
Frame = +3
Query: 132 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVL 254
+HPVLLTEAPLNP+ NREK ++ FETFN PA+++++QAVL
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVL 166
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 80.6 bits (190), Expect = 1e-15
Identities = 36/44 (81%), Positives = 41/44 (93%)
Frame = +1
Query: 523 ASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGI 654
A+S LEK+YELPDGQVI+IGNERFRCPEA+FQP+FLGMEA GI
Sbjct: 5 ANSPILEKTYELPDGQVISIGNERFRCPEAMFQPAFLGMEAPGI 48
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 78.2 bits (184), Expect = 6e-15
Identities = 41/105 (39%), Positives = 64/105 (60%), Gaps = 1/105 (0%)
Frame = +2
Query: 257 LYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL-TERGYSF 433
LYASG T G+ L SG + IYEG+ L H + L++ G LT+ L + L +RG++F
Sbjct: 772 LYASGMTLGVCLSSGFSCTQAAVIYEGHTLNHTLQTLEIGGHHLTENLKQYLRDQRGHNF 831
Query: 434 TTTAEREIVRDIKEKLCYVALDFEQKWPPLHPAAPSRSLTNFPTV 568
T+++ +IV DIKEK+CY++ D ++ +H + LT F T+
Sbjct: 832 TSSSGWQIVNDIKEKICYLSKDHLKE---VHNYKTNEGLTKFYTL 873
Score = 36.7 bits (81), Expect = 0.017
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = +1
Query: 508 EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFL 633
E+ ++ L K Y LPDGQ+I+IG E E LF+P L
Sbjct: 857 EVHNYKTNEGLTKFYTLPDGQMISIGYECISSMEPLFRPDLL 898
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 73.3 bits (172), Expect = 2e-13
Identities = 34/130 (26%), Positives = 66/130 (50%)
Frame = +2
Query: 278 TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREI 457
TG V+DSGDGV+H +P+ EGY + I + +AGRD+T ++ ++L ER E
Sbjct: 62 TGCVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITFFVQQLLREREMGIPPEQSMET 121
Query: 458 VRDIKEKLCYVALDFEQKWPPLHPAAPSRSLTNFPTVRSSLSETKDSVAQRLSSNPRSWV 637
+ IKE+ Y+ D +++ + P++ + + ++ + ++ + P W+
Sbjct: 122 AKTIKERWGYICPDIAKEFAK-YEQEPAKWIKKYESINAVTTKILLRQFAKYEQEPAKWI 180
Query: 638 WKLAAFHETT 667
K + + T
Sbjct: 181 KKYESINAVT 190
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 63.7 bits (148), Expect = 1e-10
Identities = 26/71 (36%), Positives = 45/71 (63%)
Frame = +3
Query: 42 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 221
PI+ G++ +WD EKI + + ++ HP+L++EA N + REK+T++MFE +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 222 PAMYVAIQAVL 254
PA ++ +VL
Sbjct: 63 PAFFLCKNSVL 73
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/53 (39%), Positives = 34/53 (64%)
Frame = +2
Query: 260 YASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTE 418
+A+GR+ G+V+DSG + VP+++GY L AI+R LAG +T ++ E
Sbjct: 76 FANGRSNGLVIDSGATQTSAVPVHDGYVLQQAIVRSPLAGDFITAQCRQMFEE 128
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/49 (44%), Positives = 27/49 (55%)
Frame = +3
Query: 3 EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 149
EA K T K+PI H IV +WD ME+ W + LR PE+H LL
Sbjct: 289 EAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
Score = 32.3 bits (70), Expect = 0.37
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +2
Query: 278 TGIVLDSGDGVSHTVPI 328
TG V+DSGDGV+H +P+
Sbjct: 356 TGCVIDSGDGVTHVIPV 372
>SB_22949| Best HMM Match : rve (HMM E-Value=1.2e-19)
Length = 158
Score = 34.3 bits (75), Expect = 0.091
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 572 SSLSETKDSVAQRLSSNPRSWVWKLAAFHET 664
S+ SETK SV +R + + W+W+ HET
Sbjct: 96 STKSETKASVVERFNRTSKEWMWRYFTHHET 126
>SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25)
Length = 1097
Score = 33.1 bits (72), Expect = 0.21
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 572 SSLSETKDSVAQRLSSNPRSWVWKLAAFHET 664
S+ SETK SV +R + + W+W+ HET
Sbjct: 457 STKSETKASVVERFNRTFKGWMWRYFTHHET 487
>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 33.1 bits (72), Expect = 0.21
Identities = 26/72 (36%), Positives = 31/72 (43%)
Frame = +1
Query: 247 PCSAVRVRSYHRYRAGLRRRCLPHRAHLRRIRTPPRHPASGLSRSRPHRLPHEDPHRARL 426
P R RS R R+ RRR RR R+P H S SRSR R P R+R
Sbjct: 216 PAHHRRSRSRSRSRSPRRRRRSRSPRRRRRSRSPSPHHRSHRSRSR-SRSPRRRHSRSRS 274
Query: 427 LVHYHRRAGNRS 462
H R+ + S
Sbjct: 275 PTHRRHRSRSHS 286
>SB_58386| Best HMM Match : rve (HMM E-Value=8.6e-26)
Length = 212
Score = 33.1 bits (72), Expect = 0.21
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 572 SSLSETKDSVAQRLSSNPRSWVWKLAAFHET 664
S+ SETK SV +R + + W+W+ HET
Sbjct: 93 STKSETKASVVERFNRTFKGWMWRYFTHHET 123
>SB_37416| Best HMM Match : ResIII (HMM E-Value=1.2)
Length = 563
Score = 33.1 bits (72), Expect = 0.21
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +1
Query: 202 CSKHSTRPPCTSPSKPCSAVRVRSYHRYRAG 294
C H+ R P T+PS PC V S Y AG
Sbjct: 360 CYSHARREPSTAPSLPCDLVAATSAKMYLAG 390
>SB_39041| Best HMM Match : rve (HMM E-Value=2.3e-10)
Length = 1164
Score = 31.9 bits (69), Expect = 0.49
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 572 SSLSETKDSVAQRLSSNPRSWVWKLAAFHET 664
S+ +ETK SV +R + + W+W+ HET
Sbjct: 100 STKNETKASVVERFNRTFKGWMWRYFTHHET 130
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 31.5 bits (68), Expect = 0.64
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 33 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP--EEHPVLLTEAPLNPKANRE 185
L+ P + +VT+++ E++ H F + P HPV++TE NP R+
Sbjct: 131 LRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGGVNHPVIMTEPVCNPNYCRQ 183
>SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1071
Score = 31.1 bits (67), Expect = 0.85
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Frame = +3
Query: 258 CTRPVVPPVSCWTPATVSPTPC-----PSTKDTHSP 350
CT+ +P +TP T TPC PST+ +H+P
Sbjct: 859 CTKRYIPSAKRYTPCTERYTPCTKRYTPSTEPSHAP 894
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Frame = +3
Query: 192 TQIMFETFNTPAMYVAIQAVLRCTRPVVPPVSCWTPATVSPTPCPS--TKDTHSPTP 356
+Q+ E +N P+ + CT +P +TP T TP T T TP
Sbjct: 611 SQVNSERYNAPSQSPCTERYTPCTERYIPCTERYTPCTERYTPSTERYTPSTERYTP 667
>SB_33253| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1383
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 572 SSLSETKDSVAQRLSSNPRSWVWKLAAFHE 661
S+ SETK SV +R + + W+W+ HE
Sbjct: 439 STKSETKASVVERFNRTFKGWMWRYFPHHE 468
>SB_10843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1259
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +2
Query: 158 SPQPQGQQREDDPDHVRNIQHARHVRRHPSR 250
SP P+ R D+P V A HV HPSR
Sbjct: 265 SPTPKRCVRFDEPPTVEKYSKASHVTEHPSR 295
>SB_28997| Best HMM Match : rve (HMM E-Value=2.3e-10)
Length = 1847
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 572 SSLSETKDSVAQRLSSNPRSWVWKLAAFHE 661
S+ +ETK SV +R + + W+W+ HE
Sbjct: 902 STKNETKASVVERFNRTFKGWMWRYFTHHE 931
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 42 PIEHGIVTNWDDMEKIWHHTFYNE 113
P + G + NWD ++IW +TF E
Sbjct: 292 PFQKGFLVNWDVEKQIWDYTFGKE 315
>SB_51831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1065
Score = 29.5 bits (63), Expect = 2.6
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Frame = +3
Query: 117 RVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLRCTRPVVPPVSCWT 296
++A + +P + E N K + +K+ Q M +T + + ++R +P W
Sbjct: 866 KIASKHNPEMTEEMRANLKEHLDKINQRMNDTMT---LLYNMPKIMRKFAFELPN---WA 919
Query: 297 PATVSPTPCPSTKDTHSP-TPSCV 365
P PT P+ K T +P TPS V
Sbjct: 920 PKIPLPTEPPTEKMTEAPTTPSAV 943
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +3
Query: 252 LRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 359
++ TRP VP +T PTP P T P P+
Sbjct: 929 IQTTRPTVPTTPTTQASTTRPTPPPPTSALPPPIPA 964
>SB_38098| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 503
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 572 SSLSETKDSVAQRLSSNPRSWVWKLAAFHET 664
S+ SE K SV +R + ++W+W+ ET
Sbjct: 193 STRSELKSSVVERFNRTLKTWIWRWFTHRET 223
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/84 (25%), Positives = 33/84 (39%)
Frame = +3
Query: 99 TFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLRCTRPVVP 278
T E VAPE + E ++P+ T + ET TP VA + + V
Sbjct: 4182 TMAPETTVAPET--TMAAETTVSPETTEASGTTVASETTTTPETTVAPETTMAPETTVAL 4239
Query: 279 PVSCWTPATVSPTPCPSTKDTHSP 350
+ TV+P + + T +P
Sbjct: 4240 ETTMAPETTVAPETTIAPESTEAP 4263
Score = 27.9 bits (59), Expect = 7.9
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Frame = +3
Query: 111 ELRVAPE--EHP--VLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLRCTRPVVP 278
E +APE E P + E+ P+ MT + ET TP VA + + + P
Sbjct: 4372 ETTMAPESTEAPETTMAPESTEAPETTMAPMTTVASETTKTPDTPVAPETNMVAESTLAP 4431
Query: 279 PVSCWTPATVSPTPCPSTKDTHSP 350
+ TV+P + + T SP
Sbjct: 4432 ETTMTPEITVAPKTTMAPETTVSP 4455
>SB_20279| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1100
Score = 29.5 bits (63), Expect = 2.6
Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 5/117 (4%)
Frame = +2
Query: 275 TTGIVLDSGDGVSHTVPIYEGYALP-----HAILRLDLAGRDLTDYLMKILTERGYSFTT 439
T G ++D+GD V Y G A ++L+L + L +
Sbjct: 959 TAGQLVDAGDSRQQMVAYYAGRLTDPSRQYFAAIKLELCNPSIGRLLSAVHYGNAPLVLR 1018
Query: 440 TAEREIVRDIKEKLCYVALDFEQKWPPLHPAAPSRSLTNFPTVRSSLSETKDSVAQR 610
E+E + D+ L +QK + P + SR + PT S++ +TK+S+ R
Sbjct: 1019 CVEKETIHDLL--LGNGERKKDQKHGGVIPVSNSRKTSGGPTETSTVKKTKESIKIR 1073
>SB_55327| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +1
Query: 205 SKHSTRPPCTSPSKPCSAVRVRSYHRYRAG 294
S S R P T+PS PC V S Y AG
Sbjct: 492 SGSSAREPSTAPSLPCDLVAATSAKMYLAG 521
>SB_48528| Best HMM Match : Extensin_2 (HMM E-Value=1)
Length = 329
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 534 LPREVLRTSRRSGHHYRKRKIPLPRGSLP 620
LPR ++R HY++ +PLPRG P
Sbjct: 132 LPRGGSPLTKRRESHYQEEGVPLPRGGSP 160
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +3
Query: 489 SLLTSSRNGHRCIQ--QLPREVLRTSRRSGHHYRKRKIPLPRGSLP 620
S LT R H + LPR ++R HY++ +PLPRG P
Sbjct: 137 SPLTKRRESHYQEEGVPLPRGGSPLTKRRESHYQEEGVPLPRGGGP 182
>SB_45078| Best HMM Match : ABC_tran (HMM E-Value=2.6e-36)
Length = 972
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +3
Query: 237 AIQAVLRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTP 356
A+Q L C R V +S P+ V P P T TH+P P
Sbjct: 614 AVQCTLACPR-VSRVLSPSGPSVVVTLPLPPTDHTHTPPP 652
>SB_34754| Best HMM Match : TSP_1 (HMM E-Value=7.4e-12)
Length = 439
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/73 (30%), Positives = 27/73 (36%)
Frame = +3
Query: 138 PVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLRCTRPVVPPVSCWTPATVSPT 317
PVL A P A + TQ + P ++ V P PPV P TV P
Sbjct: 22 PVLTEAATTQPPAPPPEPTQAPVADTDPPTNPPSVVEVTTTQAPPPPPVVTEAPTTV-PP 80
Query: 318 PCPSTKDTHSPTP 356
P + T P P
Sbjct: 81 PVVTDAPTTVPPP 93
>SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/65 (26%), Positives = 24/65 (36%)
Frame = +3
Query: 156 APLNPKANREKMTQIMFETFNTPAMYVAIQAVLRCTRPVVPPVSCWTPATVSPTPCPSTK 335
A P A + + +NTP I + P +PP + TP+ P P PS
Sbjct: 888 ASYQPSAPSSMPAPVPLQPYNTPMP--PISSTPYQAPPTLPPTTLTTPSWSQPVPVPSMY 945
Query: 336 DTHSP 350
P
Sbjct: 946 QPQPP 950
>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1831
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 258 CTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 359
C+RP PPV+ T +T S T +T T + TP+
Sbjct: 620 CSRPTTPPVTT-TKSTTSSTTKGTTASTTTSTPT 652
>SB_31260| Best HMM Match : rve (HMM E-Value=5.2e-25)
Length = 1962
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 572 SSLSETKDSVAQRLSSNPRSWVWKLAAFHET 664
S+ SE K SV +R + ++W+W+ + ET
Sbjct: 724 STRSELKASVVERFNRTLKTWMWRWFTYKET 754
>SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)
Length = 509
Score = 29.1 bits (62), Expect = 3.4
Identities = 25/92 (27%), Positives = 31/92 (33%), Gaps = 4/92 (4%)
Frame = +1
Query: 205 SKHSTRPPCT----SPSKPCSAVRVRSYHRYRAGLRRRCLPHRAHLRRIRTPPRHPASGL 372
S S PP + SPS+ R R + +R C HR L P RH
Sbjct: 213 SSSSLSPPSSLQSSSPSRHLHCHRPRLSNHHRPSRHHHC--HRPRLSNHHRPSRHLHCHC 270
Query: 373 SRSRPHRLPHEDPHRARLLVHYHRRAGNRS*H 468
R H H RL + H +R H
Sbjct: 271 PRLSNHHRLSRHLHSNRLRLSIHHHPSSRHHH 302
>SB_46063| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00015)
Length = 798
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 186 KMTQIMFETFNTPAMYVAIQAVLRCTRPVVPPVSCWTPATVSPTPCPST 332
+++ I+ E +NT V + ++RC P V V T + P PST
Sbjct: 601 ELSPIVAELYNTSLKEVMVNDLIRCWLPRVKFVDDLTAIEIIPRNAPST 649
>SB_30721| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 40
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +1
Query: 604 PEALFQPSFLGMEACGI 654
PE +FQPS LG+E GI
Sbjct: 3 PEIIFQPSMLGLEQAGI 19
>SB_24603| Best HMM Match : GatB_Yqey (HMM E-Value=0.7)
Length = 984
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +1
Query: 220 RPPCTSPSKPCSAVRVRSYHRYRAGLR 300
R P T+PS PC V S Y AG R
Sbjct: 532 REPSTAPSLPCDLVAATSARMYLAGQR 558
>SB_11339| Best HMM Match : TGF_beta (HMM E-Value=5.60519e-45)
Length = 481
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = +3
Query: 207 ETFNTPAMYVAIQAVLRCTRPVVPPVSCWTPATVSPTPCPSTKD 338
+ + P + +Q ++ P + P +C TP +SP T+D
Sbjct: 288 DNYLRPTNHATVQTIVNSLDPSIAPKACCTPNELSPISILYTED 331
>SB_6983| Best HMM Match : rve (HMM E-Value=0.011)
Length = 251
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 261 TRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPSCV 365
T VVPP+ P V P+P + + SPTPSC+
Sbjct: 207 TPAVVPPI----PTLVVPSPL-TQPEVESPTPSCI 236
>SB_22791| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1798
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Frame = +3
Query: 213 FNTPAMYVAIQAVLRCTRPV---VPPVSCWTPATVSPTPCPSTKDT 341
+ TPA IQ LR T+P+ P P T P PS DT
Sbjct: 570 YTTPAKRTIIQEELRYTKPLTTTTPTTPTQAPTTRPEAPPPSIPDT 615
>SB_43404| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 522
Score = 28.3 bits (60), Expect = 6.0
Identities = 27/77 (35%), Positives = 33/77 (42%)
Frame = +1
Query: 217 TRPPCTSPSKPCSAVRVRSYHRYRAGLRRRCLPHRAHLRRIRTPPRHPASGLSRSRPHRL 396
T+ P TSP K S++ +R Y+ RRRC RR HP R HR
Sbjct: 200 TKNPITSPDK-VSSLPLRCYYH----CRRRCY----RRRRRHFYHHHP----RRYHNHRR 246
Query: 397 PHEDPHRARLLVHYHRR 447
HR + HYHRR
Sbjct: 247 LRYHHHRP-IFYHYHRR 262
>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
Length = 382
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +3
Query: 258 CTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPSCVWT*P 377
CT P ++ P T + T P TK P PS + T P
Sbjct: 150 CTGTPEPTITSKPPVTETTTTKPETKPPKPPAPSTIPTPP 189
>SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 28.3 bits (60), Expect = 6.0
Identities = 27/76 (35%), Positives = 35/76 (46%)
Frame = +1
Query: 235 SPSKPCSAVRVRSYHRYRAGLRRRCLPHRAHLRRIRTPPRHPASGLSRSRPHRLPHEDPH 414
S S+P S R RS R R R R R R ++ R S SRSR + P P+
Sbjct: 153 SDSRPRSRYRGRSRSRSRDRYRER----RPRKSRSKSLDR---SRRSRSRSYSRPSPSPY 205
Query: 415 RARLLVHYHRRAGNRS 462
R+R RR+ +RS
Sbjct: 206 RSRRSRSRTRRSRSRS 221
>SB_24841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 579
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +3
Query: 459 FVTSRRSCATSLLTSSRNGHRCIQQLPREVLRTSRRSGHHYRKRK-IPLPR 608
FV S +++ R+G + + P ++ S + HH +KRK I LPR
Sbjct: 69 FVGSLVQLGFHVISPCRSGSQITRSSPVQLKNISLQQAHHQQKRKMIQLPR 119
>SB_10665| Best HMM Match : PT (HMM E-Value=6.2)
Length = 215
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +1
Query: 313 PHRAHLRRIRTPPR-HPASGLSRSRPHRLPHEDPH 414
PHR H+ RTP R H + PH P +PH
Sbjct: 161 PHRPHMDPTRTPHRPHMDPTRTSHGPHTDPTRNPH 195
>SB_12136| Best HMM Match : ResIII (HMM E-Value=0.24)
Length = 1118
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1
Query: 220 RPPCTSPSKPCSAVRVRSYHRYRAG 294
R P T+PS PC+ V S Y AG
Sbjct: 821 REPSTAPSMPCNLVAATSARMYLAG 845
>SB_8145| Best HMM Match : RNA_pol_Rpb2_6 (HMM E-Value=0)
Length = 893
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 570 LTVGKFVRLLEGAAGCSGGHF 508
+TVGK + L+ G AG GHF
Sbjct: 366 MTVGKLIELIAGKAGVLEGHF 386
>SB_51082| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1529
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 572 SSLSETKDSVAQRLSSNPRSWVWKLAAFHET 664
S+ SE K SV +R + ++W+W+ ET
Sbjct: 232 STRSELKASVVERFNRTLKTWMWRWFTHRET 262
>SB_36584| Best HMM Match : ResIII (HMM E-Value=0.95)
Length = 1244
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1
Query: 220 RPPCTSPSKPCSAVRVRSYHRYRAG 294
R P T+PS PC+ V S Y AG
Sbjct: 757 REPSTAPSLPCNLVAATSARMYLAG 781
>SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1202
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 255 RCTRPVVPPVSCWTPATVSPTP-CPSTKDTHSPTPS 359
R P+ PP C + V PTP S+K + SP+PS
Sbjct: 328 RTFSPISPPAGC-AASPVPPTPPAISSKRSFSPSPS 362
>SB_23869| Best HMM Match : rve (HMM E-Value=2.2e-16)
Length = 1456
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 581 SETKDSVAQRLSSNPRSWVWKLAAFHET 664
SE K SV +R + + W+W HET
Sbjct: 1070 SEAKASVVERYNRTFKGWMWLYFTHHET 1097
>SB_474| Best HMM Match : dsrm (HMM E-Value=3.2e-20)
Length = 918
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1
Query: 220 RPPCTSPSKPCSAVRVRSYHRYRAG 294
R P T+PS PC V S + Y AG
Sbjct: 603 REPSTAPSLPCDLVAATSANMYLAG 627
>SB_40412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 27.9 bits (59), Expect = 7.9
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = +1
Query: 211 HSTRPPCTS--PSKPCSAVRVRSYHRYRAGLRRRCLPHRAH-LRRIRTPPRHPASGL 372
HST C + P + + R + + RAG + H LRR TPP P SGL
Sbjct: 174 HSTGKTCLALGPKEASANPREFTEEQRRAGQGHTPYASKTHPLRRQNTPPPPPKSGL 230
>SB_2065| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 619
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1
Query: 220 RPPCTSPSKPCSAVRVRSYHRYRAG 294
R P T+PS PC+ V S Y AG
Sbjct: 280 REPSTAPSLPCNLVAATSARMYLAG 304
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,060,776
Number of Sequences: 59808
Number of extensions: 575312
Number of successful extensions: 2734
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 2215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2702
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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