Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40229
         (668 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             105   5e-25
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.6  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              22   6.1  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   6.1  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   8.0  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   8.0  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  105 bits (251), Expect = 5e-25
 Identities = 49/49 (100%), Positives = 49/49 (100%)
 Frame = +1

Query: 508 EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGI 654
           EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGI
Sbjct: 1   EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGI 49


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = +1

Query: 235 SPSKPCSAVRVRSYHRYRAGLRRRCLPHRAHLRRIRTPPRHPASGLSRSRP 387
           S ++   ++  +++HR        C P   +L +I + P HP +  S S P
Sbjct: 55  SGTRSSESLTAQAHHRLYPAFSSSCDPVPGNLEQIGSRPLHPPAS-STSLP 104


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = +2

Query: 515 PPLHPAAPSRSLTNFPTVRSSLSETKDSVAQRLSSNPR 628
           PP    +     +  P   S LS T  ++A+ L   PR
Sbjct: 678 PPARSPSSQAQASQCPQTASLLSSTHSTLARSLMEGPR 715


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 114  LRVAPEEHPVLLTEAPLNPKANREKM 191
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 12/34 (35%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
 Frame = +1

Query: 343 TP-PRHPASGLSRSRPHRLPHEDPHRARLLVHYH 441
           TP P H   G   S  H  PH     A    H H
Sbjct: 411 TPGPHHHTMGHGHSHIHATPHHHHSHAATPHHQH 444


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = +3

Query: 495 LTSSRNGHRCIQQLPREVLRTSRRSGHHYRKRKIPLPRGSLPTLVLGYGSLRHSTR 662
           LT+   G+ C++  P   +   RR  H      IP+P+ +   ++  YG  + + R
Sbjct: 24  LTAKLLGN-CVRVSPVITIEPRRRKFHKPITLTIPVPQAANKGMINQYGGEQPTLR 78


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 662 SRGMPQASIPKNEGWKRASGQRNLSFPIVMT 570
           S+ + Q  IP +      +G+RN+  PIV +
Sbjct: 162 SKLLKQVKIPHDIAINSTTGKRNVVTPIVQS 192


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 593 DSVAQRLSSNPRSWVWKLAAFHE 661
           D + Q L + PR ++  L A H+
Sbjct: 84  DKILQVLGATPRDFLQNLDALHD 106


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 593 DSVAQRLSSNPRSWVWKLAAFHE 661
           D + Q L + PR ++  L A H+
Sbjct: 84  DKILQVLGATPRDFLQNLDALHD 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,720
Number of Sequences: 438
Number of extensions: 4887
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)