Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40228
         (603 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   2.6  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    22   3.5  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    22   3.5  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    22   3.5  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    22   4.6  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    22   4.6  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   4.6  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 342 WDKVSPEFTSLP 307
           W K+ P FTSLP
Sbjct: 228 WAKLVPHFTSLP 239


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 20/67 (29%), Positives = 28/67 (41%)
 Frame = -3

Query: 370 LFRRSRAHVLGQSFAGVYLVALDVANQPVVPFAKCGFFTDGASGSVMARV*YCPGPRPIS 191
           L RRS A    +  A    +AL    QP+ PF     F  G S  + A   Y P  +  S
Sbjct: 175 LRRRSTAASRSRLAAFKRTIALGAFYQPLQPFPPPYPFYPGTSAMLAAYQRYNPYLQAAS 234

Query: 190 LKARLSP 170
           +  + +P
Sbjct: 235 MLPKPTP 241


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +3

Query: 375 ACTDTCSSCTNNHRSSHSTSRD 440
           ACTD  SSC +    S S   D
Sbjct: 32  ACTDDLSSCWSEDMGSFSLPLD 53


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +3

Query: 393 SSCTNNHRSSHSTSRDSLTLRATNVPISKLPSSPRSTT*GSDCGQLLRS 539
           +S  +N  + H   R + T   T    ++   +PR+T   S CGQL  +
Sbjct: 262 TSSPSNRFTRHLIQRRTHTRHTTTSHNTR--GTPRTTPASSRCGQLFNT 308


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = +1

Query: 295 WQHPGQRG 318
           W++PGQRG
Sbjct: 141 WEYPGQRG 148


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = +1

Query: 295 WQHPGQRG 318
           W++PGQRG
Sbjct: 145 WEYPGQRG 152


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 372  QACTDTCSSCTNNHRSSHSTSRDSLTLRATNVP 470
            Q   D   + TNN R+  +TS  S+     N+P
Sbjct: 995  QKLCDKTETHTNN-RTHSATSNSSVNANTNNIP 1026


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,158
Number of Sequences: 336
Number of extensions: 3542
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15248386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)