Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40228
(603 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|... 28 0.91
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 28 1.2
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 28 1.2
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 3.7
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 26 3.7
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 26 3.7
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 26 4.9
SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator Tip4... 26 4.9
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom... 25 6.4
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 25 6.4
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom... 25 6.4
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom... 25 8.5
>SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 160
Score = 28.3 bits (60), Expect = 0.91
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 1 LFQYIRVLTRAMSTVAKSFEASQVVPDV-IPKAPAALLQVKY 123
LFQ + +LT S A ++ SQV+P + I A AL Q KY
Sbjct: 6 LFQSVGILTPCGSAGAIAYITSQVLPAILIGPADVALAQWKY 47
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 478 FEIGTFVARSVSESRLVECELRWLF 404
F +G FVARS+ +SR++ + LF
Sbjct: 1375 FALGQFVARSIYDSRIISIQFNPLF 1399
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.9 bits (59), Expect = 1.2
Identities = 21/78 (26%), Positives = 39/78 (50%)
Frame = +3
Query: 273 ANGTTGWLATSRATR*TPAKLCPSTWALDLRKRQACTDTCSSCTNNHRSSHSTSRDSLTL 452
A+ T+ L +S AT + A ++ +L + + SS T++ +S ST+ SL
Sbjct: 102 ASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTSSSLAS 161
Query: 453 RATNVPISKLPSSPRSTT 506
+TN S P+S +++
Sbjct: 162 SSTNSTTSATPTSSATSS 179
Score = 25.4 bits (53), Expect = 6.4
Identities = 30/121 (24%), Positives = 46/121 (38%), Gaps = 6/121 (4%)
Frame = +3
Query: 162 SNSGERRAFSEMGRGPGQYYTLAMTDPDAPSVKNPHFANGTTGWLATS------RATR*T 323
SNS + QY T ++ PS AN TT A+S +T T
Sbjct: 258 SNSTTAATSASATSSSAQYNTSSLLPSSTPSSTPLSSANSTTATSASSTPLTSVNSTTTT 317
Query: 324 PAKLCPSTWALDLRKRQACTDTCSSCTNNHRSSHSTSRDSLTLRATNVPISKLPSSPRST 503
A P + ++ T T S+ ++ S+ +TS S L + N + SS T
Sbjct: 318 SASSTPLS-SVSSANSTTATSTSSTPLSSVNSTTATSASSTPLTSVNSTTATSASSTPLT 376
Query: 504 T 506
+
Sbjct: 377 S 377
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 26.2 bits (55), Expect = 3.7
Identities = 26/86 (30%), Positives = 36/86 (41%)
Frame = +1
Query: 271 SRMAPLAGWQHPGQRGKLRRNFVPVRGLWTSGKDRPAQIRVPLVQTTIEAHIRRAETH*H 450
SR +A + Q+G L R+FVP + SG PA T EA ++ ET
Sbjct: 482 SRAGFVAALESRLQKGPLMRSFVPNKSKSPSGTKSPAS------GETSEAGVKETETTTS 535
Query: 451 FERQTCQFQNCRVRQEVQPRDPIAGN 528
E + R R V+ R P + N
Sbjct: 536 SESALPDARKSRARGPVR-RPPTSVN 560
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 26.2 bits (55), Expect = 3.7
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Frame = +3
Query: 369 RQACTDTCSSCTNNHRSSHSTSRD----SLTLRATNVPISKLPSSP 494
+Q +D+ S ++NH S+H T D S + ++ P +LP+SP
Sbjct: 36 KQEKSDSTLSSSSNHDSNHDTPADVDNSSNVNKNSSSPERELPTSP 81
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = +2
Query: 320 NSGETLSQYVGSGPPEKTGLHRYVFLLYKQPSKLTFDEPRLTNTSSDKRANF 475
N+G QY G P+ TG + + QP + F +P+ T + F
Sbjct: 329 NTGFVQPQYTGFVQPQHTGFVQPQATGFMQPQRTGFVQPQATGFVQPQATGF 380
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 180 RAFSEMGRGPGQYYTLAMTDPDAPSVKNP 266
R S G YY ++ T P APS +NP
Sbjct: 435 RTESSPAWGTSGYYDVSSTSPVAPSDRNP 463
>SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator
Tip41|Schizosaccharomyces pombe|chr 3|||Manual
Length = 252
Score = 25.8 bits (54), Expect = 4.9
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Frame = +2
Query: 251 VRKEPTFREWHHWLVGNIQGNEVNSGE--TLSQYVGSGPPEKTGLHRYVFLLYK-QPSKL 421
++K+ F + +W + +G+ + S E L +G PPE T + Y+ + YK QP
Sbjct: 1 MQKQDDF-SFKYWTIKVQRGSILKSHEMENLQSTLGFPPPEMTFGNNYISIEYKNQPVVG 59
Query: 422 TFDEPRLTNTSSDKRANFKIAEFAKKY 502
F E L + K + FAK +
Sbjct: 60 FFTEDALKMVGT-KPEDVMQVSFAKDW 85
>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -1
Query: 345 YWDKVSPEFTSLPWMLPTSQWCHSRNVGSLRTAHQG 238
YW V+P T L L + WC + N G L +G
Sbjct: 23 YWPSVAPAATELISKLINAFWCQTLN-GQLVEEDEG 57
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 79 DVIPKAPAALLQVKYPSGVEVKEGNELTPTLVKDE 183
D+I K L++ +P G + LTP VK E
Sbjct: 994 DLISKGATKPLEIAFPDGASILVAFRLTPVPVKLE 1028
>SPBC6B1.05c |||ubiquitin-like conjugating
enzyme|Schizosaccharomyces pombe|chr 2|||Manual
Length = 649
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +2
Query: 263 PTFREWHHWLVGNIQGNE--VNSGETLSQ 343
P+F+E HW+V ++ E + SG LSQ
Sbjct: 139 PSFKETPHWIVKDLSPAESLIPSGPILSQ 167
>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 493 QEVQPRDPIAGNFYEAQYDDYVPI 564
++ +P DP AGN ++A YDD + +
Sbjct: 519 KQYKPFDP-AGNKHDANYDDIIEL 541
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,658,558
Number of Sequences: 5004
Number of extensions: 57337
Number of successful extensions: 165
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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