Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40228
(603 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44437| Best HMM Match : PBP (HMM E-Value=2.5e-05) 46 2e-05
SB_8527| Best HMM Match : zf-C2H2 (HMM E-Value=4.3e-21) 44 7e-05
SB_52449| Best HMM Match : PBP (HMM E-Value=1.1e-05) 34 0.077
SB_19649| Best HMM Match : Keratin_B2 (HMM E-Value=0.082) 30 1.3
SB_47579| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_39227| Best HMM Match : DRMBL (HMM E-Value=0.76) 29 3.8
SB_47305| Best HMM Match : I-set (HMM E-Value=0) 28 5.1
SB_26722| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32) 28 6.7
SB_45732| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_38971| Best HMM Match : SRCR (HMM E-Value=0) 28 6.7
SB_19438| Best HMM Match : DEAD (HMM E-Value=7.5e-07) 28 6.7
SB_12046| Best HMM Match : fn3 (HMM E-Value=0) 28 6.7
SB_59625| Best HMM Match : P19Arf_N (HMM E-Value=5.1) 27 8.8
SB_54303| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_34601| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_26368| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_53547| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_26695| Best HMM Match : Peptidase_M14 (HMM E-Value=0) 27 8.8
SB_3047| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
>SB_44437| Best HMM Match : PBP (HMM E-Value=2.5e-05)
Length = 314
Score = 46.0 bits (104), Expect = 2e-05
Identities = 20/46 (43%), Positives = 29/46 (63%)
Frame = +2
Query: 284 HWLVGNIQGNEVNSGETLSQYVGSGPPEKTGLHRYVFLLYKQPSKL 421
H + NIQG+ V++G L +Y+ PP+ TG HRY F L +Q +L
Sbjct: 141 HASLVNIQGSRVSNGTVLCEYLPPIPPQGTGFHRYTFCLLRQEQQL 186
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 94 APAALLQVKYPSGVEVKEGNELTPT 168
+P L ++Y SG +V GN LTP+
Sbjct: 92 SPCVNLDIRYESGAKVHHGNFLTPS 116
>SB_8527| Best HMM Match : zf-C2H2 (HMM E-Value=4.3e-21)
Length = 1049
Score = 44.4 bits (100), Expect = 7e-05
Identities = 21/54 (38%), Positives = 35/54 (64%)
Frame = -3
Query: 424 CELRWLFVQEEHVSVQACLFRRSRAHVLGQSFAGVYLVALDVANQPVVPFAKCG 263
C L L V +++V+++A R +RA+VL S Y+ A D+ ++PVVPF++ G
Sbjct: 332 CNLPLLLVHKKNVTMEASSLRWTRANVLSGSHPLAYITARDIDHKPVVPFSEFG 385
>SB_52449| Best HMM Match : PBP (HMM E-Value=1.1e-05)
Length = 115
Score = 34.3 bits (75), Expect = 0.077
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 15/98 (15%)
Frame = +2
Query: 269 FREWHHWLVGNIQGNE-------------VNSG--ETLSQYVGSGPPEKTGLHRYVFLLY 403
+R W H+L NI +E + SG L Y PP +GLHRY +
Sbjct: 15 YRSWLHYLKVNIPSDELAQRLDIQSGMDTIQSGMDTELKSYRPPSPPSGSGLHRYKYYAL 74
Query: 404 KQPSKLTFDEPRLTNTSSDKRANFKIAEFAKKYNLGIR 517
+Q K+ P + +R +F EFA K+NL ++
Sbjct: 75 EQTGKV---RP----SPISERRSFDAQEFAAKHNLVVK 105
>SB_19649| Best HMM Match : Keratin_B2 (HMM E-Value=0.082)
Length = 279
Score = 30.3 bits (65), Expect = 1.3
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Frame = +3
Query: 207 PGQYYTLAMTDPDAPSVKNPHFANGTTGWLATSRATR*TPAKLCPSTWALDLR---KRQA 377
P +Y T + + PS+K P + TT ++ ++ + PAK ++ + + K+ A
Sbjct: 88 PAKYQTTSQVSNNQPSIKQP-AKHQTTSQVSNNQPSIKQPAKYQTTSQVSNNQPSIKQPA 146
Query: 378 CTDTCSSCTNNHRSSHSTSRDSLTLRA-TNVPISKLPSSPRSTT 506
T S +NN S ++ T +A N P K P+ ++T+
Sbjct: 147 KYQTTSQVSNNQPSIKQPAKYQTTSQAPKNQPSIKQPAKYQTTS 190
>SB_47579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 316
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = -3
Query: 481 NFEIGTFVARSVSESRLVECELRWLFVQEEHVSVQACLFRRSRAHVLGQSF--AGVYLVA 308
N ++G + + E R +L W + + ++VQ C R+ HVL + A V+L A
Sbjct: 92 NGDLGALIKKHKREKRYTAEDLVWKLLYQLVLAVQECHRRKDGGHVLHRDLKPANVFLDA 151
>SB_39227| Best HMM Match : DRMBL (HMM E-Value=0.76)
Length = 600
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -2
Query: 398 RGTRICAGLSFPEVQSPRTGTKFRRSLPRCPGCCQPASGAIREMW 264
+G + +S EV+SP + ++P PG P+SGA+ +++
Sbjct: 539 QGDHLAGLVSAGEVRSPGCSPEDVLAVPASPGLVPPSSGALTDLY 583
>SB_47305| Best HMM Match : I-set (HMM E-Value=0)
Length = 5832
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +1
Query: 49 KSFEASQVVPDVIPKAPAALLQVKYPSGVEVKEGNELTPTLVKDEPSVKW 198
+SFE P V +AP+ L+++ + +E + + K +P +KW
Sbjct: 2919 RSFEVDVTAPKVKGEAPSFSLELRPIAAIEEFDSKLICHVSGKPKPQIKW 2968
>SB_26722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 319
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +2
Query: 398 LYKQPSKLTFDEPRLTNTSSDKRANFKIAEFAKKYNLGIRLRATSTKRSMTTTSL 562
L ++PSK T + + + D+R + EF ++Y G+R K T +L
Sbjct: 179 LMQRPSKKTQTKEGTGDETEDRRLAETMREFTREYGRGVRQANVRAKTKKLTGTL 233
>SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32)
Length = 398
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +2
Query: 320 NSGETLSQYVGSGPPEKTGLHRYVFLLYKQPSKLTFDEPRLTNTSSDKRAN 472
NS T SQ V S PP + ++ L K PS+ +F R+ +++ ++ N
Sbjct: 294 NSRFTTSQAVQSPPPLPSSYREFMVQLQKLPSEGSFPPNRVAPSATMQQRN 344
>SB_45732| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 140
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +2
Query: 194 NGTRTRTVLHSGHDRP*CAVRKEPTFREWHHWLVGNIQGNEVNSGETLSQYVGSGPPEKT 373
N T+ S P ++R +P ++HH LV + + +NS T S P+ T
Sbjct: 59 NHREPNTITKSTTGNPRASIR-QPQEAQYHH-LVNHREPKSINSSTTGSPIPSPRQPQGT 116
Query: 374 GLHRYV 391
H++V
Sbjct: 117 QEHQFV 122
>SB_38971| Best HMM Match : SRCR (HMM E-Value=0)
Length = 2436
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 186 FSEMGRGPGQYYTLAMTDPDAPSVKNPHFANGTTG 290
F+ +G GPG A T+ D PS P+ G G
Sbjct: 1525 FTSVGEGPGSIRLYANTEQDVPSAPPPN-VRGVNG 1558
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 186 FSEMGRGPGQYYTLAMTDPDAPSVKNPHFANGTTG 290
F+ +G GPG A T+ D PS P+ G G
Sbjct: 1793 FTSVGEGPGSIRLYANTEQDVPSAPPPN-VRGVNG 1826
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 186 FSEMGRGPGQYYTLAMTDPDAPSVKNPHFANGTTG 290
F+ +G GPG A T+ D PS P+ G G
Sbjct: 2033 FTSVGEGPGSIRLYANTEQDVPSAPPPN-VRGVNG 2066
>SB_19438| Best HMM Match : DEAD (HMM E-Value=7.5e-07)
Length = 391
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = -1
Query: 579 ELLVQNRDVVVILRFVEVARNRI 511
ELLV ++DVV++L FV + + ++
Sbjct: 269 ELLVHHKDVVLVLPFVSIVQEKV 291
>SB_12046| Best HMM Match : fn3 (HMM E-Value=0)
Length = 652
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 186 FSEMGRGPGQYYTLAMTDPDAPSVKNPHFANGTTG 290
F+ +G GPG A T+ D PS P+ G G
Sbjct: 249 FTSVGEGPGSIRLYANTEQDVPSAPPPN-VRGVNG 282
>SB_59625| Best HMM Match : P19Arf_N (HMM E-Value=5.1)
Length = 1463
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +2
Query: 398 LYKQPSKLTFDEPRLTNTSSDKRANFKIAEFAKKYNLGIRLRATSTKRSMTTTSL 562
L ++PSK T + + + D+R + EF ++Y G+R K T +L
Sbjct: 18 LMQRPSKKTQTKEGTGDETEDRRRAETMREFTREYGRGVRQANVRAKTKELTGTL 72
>SB_54303| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 696
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +2
Query: 398 LYKQPSKLTFDEPRLTNTSSDKRANFKIAEFAKKYNLGIRLRATSTKRSMTTTSL 562
L ++PSK T + + + D+R + EF ++Y G+R K T +L
Sbjct: 421 LMQRPSKKTQTKEGTGDETEDRRRAETMREFTREYGRGVRQANVRAKTKELTGAL 475
>SB_34601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1391
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/28 (35%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Frame = +1
Query: 361 SGKDRPAQIRVPLVQTTIE-AHIRRAET 441
S KD+P+ ++VPL +T++ +++ +ET
Sbjct: 856 SNKDKPSNVKVPLPSSTVDTTNLKTSET 883
>SB_26368| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 508
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +2
Query: 398 LYKQPSKLTFDEPRLTNTSSDKRANFKIAEFAKKYNLGIRLRATSTKRSMTTTSL 562
L ++PSK T + + + D+R + EF ++Y G+R K T +L
Sbjct: 269 LMQRPSKKTQTKEGTGDETEDRRRAETMREFTREYGRGVRQANVRAKTKELTGTL 323
>SB_53547| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1381
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +2
Query: 398 LYKQPSKLTFDEPRLTNTSSDKRANFKIAEFAKKYNLGIRLRATSTKRSMTTTSL 562
L ++PSK T + + + D+R + EF ++Y G+R K T +L
Sbjct: 758 LMQRPSKKTQTKEGTGDETEDRRRAETMREFTREYGRGVRQANVRAKTKELTGTL 812
>SB_26695| Best HMM Match : Peptidase_M14 (HMM E-Value=0)
Length = 441
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +2
Query: 233 DRP*CAVRKEPTFREWHHWLVGNIQGNEVNSGETLSQYVG 352
D+P + EP F+ +GN+ GNEV S E L Q +G
Sbjct: 75 DKPGKHEKGEPEFK-----YIGNMHGNEVVSREILLQLIG 109
>SB_3047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 332
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +2
Query: 398 LYKQPSKLTFDEPRLTNTSSDKRANFKIAEFAKKYNLGIRLRATSTKRSMTTTSL 562
L ++PSK T + + + D+R + EF ++Y G+R K T +L
Sbjct: 55 LMQRPSKKTQTKEGTGDETEDRRRAETMREFTREYGRGVRQANVRAKTKELTGTL 109
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,668,057
Number of Sequences: 59808
Number of extensions: 480940
Number of successful extensions: 1556
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1550
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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