Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40228
(603 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016423-4|AAX88829.1| 185|Caenorhabditis elegans Hypothetical ... 126 2e-29
AF016423-3|AAB65322.1| 221|Caenorhabditis elegans Hypothetical ... 126 2e-29
AL034365-5|CAA22258.1| 172|Caenorhabditis elegans Hypothetical ... 56 3e-08
Z79603-10|CAI79233.1| 224|Caenorhabditis elegans Hypothetical p... 36 0.017
U23177-2|AAA64331.2| 538|Caenorhabditis elegans Hypothetical pr... 36 0.017
U39999-8|AAY44011.1| 146|Caenorhabditis elegans Hypothetical pr... 32 0.36
U39999-7|AAY44012.1| 232|Caenorhabditis elegans Hypothetical pr... 31 0.84
AC024881-2|AAK71414.1| 274|Caenorhabditis elegans Serpentine re... 29 1.9
Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical pr... 28 5.9
AF016418-6|AAK18899.1| 248|Caenorhabditis elegans Hypothetical ... 28 5.9
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr... 27 7.8
U40030-1|AAR12977.1| 235|Caenorhabditis elegans Hypothetical pr... 27 7.8
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein. 27 7.8
>AF016423-4|AAX88829.1| 185|Caenorhabditis elegans Hypothetical
protein F40A3.3b protein.
Length = 185
Score = 126 bits (303), Expect = 2e-29
Identities = 53/87 (60%), Positives = 68/87 (78%), Gaps = 1/87 (1%)
Frame = +2
Query: 254 RKEPTFREWHHWLVGNIQGNEVNSGETLSQYVGSGPPEKTGLHRYVFLLYKQPSKL-TFD 430
RKEPT+REWHHWLV NI GN++ G+TLS+Y+G+GPP KTGLHRYV+L+YKQ ++ +
Sbjct: 74 RKEPTYREWHHWLVVNIPGNDIAKGDTLSEYIGAGPPPKTGLHRYVYLIYKQSGRIEDAE 133
Query: 431 EPRLTNTSSDKRANFKIAEFAKKYNLG 511
RLTNTS DKR +K A+F K+ LG
Sbjct: 134 HGRLTNTSGDKRGGWKAADFVAKHKLG 160
Score = 60.9 bits (141), Expect = 7e-10
Identities = 28/55 (50%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Frame = +1
Query: 46 AKSFEASQVVPDVIPK-APAALLQVKYPSGVEVKEGNELTPTLVKDEPSVKWDAD 207
A++F +V+PDV+ P+ ++ VK+ SGVE GN LTPT VKD P VKWDA+
Sbjct: 3 AEAFTKHEVIPDVLASNPPSKVVSVKFNSGVEANLGNVLTPTQVKDTPEVKWDAE 57
Score = 43.6 bits (98), Expect = 1e-04
Identities = 17/24 (70%), Positives = 21/24 (87%)
Frame = +1
Query: 514 PIAGNFYEAQYDDYVPILYKQLGA 585
P+ GN ++A+YDDYVPIL KQLGA
Sbjct: 162 PVFGNLFQAEYDDYVPILNKQLGA 185
Score = 33.9 bits (74), Expect = 0.090
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = +3
Query: 207 PGQYYTLAMTDPDAPSVKNPHF 272
PG YTL TDPDAPS K P +
Sbjct: 58 PGALYTLIKTDPDAPSRKEPTY 79
>AF016423-3|AAB65322.1| 221|Caenorhabditis elegans Hypothetical
protein F40A3.3a protein.
Length = 221
Score = 126 bits (303), Expect = 2e-29
Identities = 53/87 (60%), Positives = 68/87 (78%), Gaps = 1/87 (1%)
Frame = +2
Query: 254 RKEPTFREWHHWLVGNIQGNEVNSGETLSQYVGSGPPEKTGLHRYVFLLYKQPSKL-TFD 430
RKEPT+REWHHWLV NI GN++ G+TLS+Y+G+GPP KTGLHRYV+L+YKQ ++ +
Sbjct: 110 RKEPTYREWHHWLVVNIPGNDIAKGDTLSEYIGAGPPPKTGLHRYVYLIYKQSGRIEDAE 169
Query: 431 EPRLTNTSSDKRANFKIAEFAKKYNLG 511
RLTNTS DKR +K A+F K+ LG
Sbjct: 170 HGRLTNTSGDKRGGWKAADFVAKHKLG 196
Score = 62.1 bits (144), Expect = 3e-10
Identities = 30/62 (48%), Positives = 43/62 (69%), Gaps = 2/62 (3%)
Frame = +1
Query: 28 RAMSTVA-KSFEASQVVPDVIPK-APAALLQVKYPSGVEVKEGNELTPTLVKDEPSVKWD 201
R ++T+A ++F +V+PDV+ P+ ++ VK+ SGVE GN LTPT VKD P VKWD
Sbjct: 32 RGLATMAAEAFTKHEVIPDVLASNPPSKVVSVKFNSGVEANLGNVLTPTQVKDTPEVKWD 91
Query: 202 AD 207
A+
Sbjct: 92 AE 93
Score = 43.6 bits (98), Expect = 1e-04
Identities = 17/24 (70%), Positives = 21/24 (87%)
Frame = +1
Query: 514 PIAGNFYEAQYDDYVPILYKQLGA 585
P+ GN ++A+YDDYVPIL KQLGA
Sbjct: 198 PVFGNLFQAEYDDYVPILNKQLGA 221
Score = 33.9 bits (74), Expect = 0.090
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = +3
Query: 207 PGQYYTLAMTDPDAPSVKNPHF 272
PG YTL TDPDAPS K P +
Sbjct: 94 PGALYTLIKTDPDAPSRKEPTY 115
>AL034365-5|CAA22258.1| 172|Caenorhabditis elegans Hypothetical
protein Y69E1A.5 protein.
Length = 172
Score = 55.6 bits (128), Expect = 3e-08
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Frame = +2
Query: 254 RKEPTFREWHHWLVGNIQGNE----VNSGETLSQYVGSGPPEKTGLHRYVFLLYKQPSKL 421
RK P+ EW HWLV NI + +N G+ Y P +T LHRYV L+++ +
Sbjct: 75 RKNPSVAEWLHWLVCNIPASNIIDGINGGQHQMAYGSPAPGPRTDLHRYVILMWEHAGR- 133
Query: 422 TFDEPRLTNTSSDKRANFKIAEFAKKYNLG 511
R++ RA F + +F +K LG
Sbjct: 134 -----RISVPKPSSRAKFNVKQFIEKNKLG 158
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +3
Query: 198 GRGPGQYYTLAMTDPDAPSVKNPHFA 275
G P YT+ M DPD S KNP A
Sbjct: 56 GADPESIYTVLMIDPDNLSRKNPSVA 81
>Z79603-10|CAI79233.1| 224|Caenorhabditis elegans Hypothetical
protein M163.11 protein.
Length = 224
Score = 36.3 bits (80), Expect = 0.017
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = +3
Query: 336 CPSTWALDLRKRQACTDTCSSCTNNHRSSHSTSRDSLTLRATNVPISKLPSSPRSTT 506
C ST+ +K Q C TCS C+++ SS S+S S + ++ S SS S++
Sbjct: 18 CTSTFYTTAQKTQYCASTCSLCSDSSDSSSSSSTASTSSSSSTAATSSDDSSSSSSS 74
Score = 30.7 bits (66), Expect = 0.84
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = +3
Query: 243 DAPSVKNPHFANGTTGWLAT-SRATR*TPAKLCPSTWALDLRKRQACTDTCSSCTNNHRS 419
D+ SV + ++ TT + + S T C S++ K Q C TCS C+++ S
Sbjct: 115 DSTSVVSSTSSSTTTTCVDSFSTCTSWAANGFCTSSFYTTAIKTQYCAATCSLCSSSSDS 174
Query: 420 SHSTSRDSLTLRATN 464
S S+S S + T+
Sbjct: 175 SSSSSTASTSSSCTD 189
>U23177-2|AAA64331.2| 538|Caenorhabditis elegans Hypothetical
protein C56G2.4 protein.
Length = 538
Score = 36.3 bits (80), Expect = 0.017
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Frame = +2
Query: 284 HWLVGNIQGNEVNS----GETLSQYVGSGPPEKTGLHRYVFLLYKQPSKLTFDEPRLTNT 451
HWL +I +N+ G T + YV P + + H Y+F+L QP+ + E
Sbjct: 375 HWLEVDIPAANLNAANGNGLTKADYVPLIPKKPSTCHSYLFVLLAQPASMQTLE-SYCEG 433
Query: 452 SSDKRANFKIAEFAKKYNLGIRLRATSTKRS 544
+ R F++ F +++ G+RL A ST S
Sbjct: 434 MCETRKKFRLELFKQQH--GLRLSALSTVSS 462
>U39999-8|AAY44011.1| 146|Caenorhabditis elegans Hypothetical
protein F41G3.19 protein.
Length = 146
Score = 31.9 bits (69), Expect = 0.36
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +3
Query: 327 AKLCPSTWALDLRKRQACTDTCSSCTNNHRSSHSTSRDSLTLRATN 464
A C ++ L L K Q C TC CT++ +S +TS S + TN
Sbjct: 64 ASYCTNSVYLTLMKTQ-CPKTCGYCTSSSSTSSTTSSSSTCVDLTN 108
>U39999-7|AAY44012.1| 232|Caenorhabditis elegans Hypothetical
protein F41G3.20 protein.
Length = 232
Score = 30.7 bits (66), Expect = 0.84
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +3
Query: 327 AKLCPSTWALDLRKRQACTDTCSSCTNNHRSSHSTSRDSLTLRATNVPISKLP 485
A C ++ L L K+Q C TC CT++ ++ S+S + L + +S P
Sbjct: 101 ASYCANSAYLTLMKQQ-CPKTCGYCTSSSATTTSSSSTCIDLTNASTGVSDCP 152
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 327 AKLCPSTWALDLRKRQACTDTCSSCTNNHRSSHSTS 434
A C ++ L L K+Q C TC CT++ SS S+S
Sbjct: 155 ASYCTNSAYLTLMKQQ-CPKTCGYCTSSSSSSSSSS 189
>AC024881-2|AAK71414.1| 274|Caenorhabditis elegans Serpentine
receptor, class sx protein7 protein.
Length = 274
Score = 29.5 bits (63), Expect = 1.9
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -2
Query: 410 VVCTRGTRICAGLSFPEVQSPRT 342
++C GT + GL+FP++Q RT
Sbjct: 58 IICLLGTMVDVGLAFPDIQLDRT 80
>Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical protein
F54E4.1 protein.
Length = 2948
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = -3
Query: 502 VLLGELGNFEIGTFVARSVSESRLVECELRWLFVQEEHVSVQACLFRRSR 353
V+ LG+ G + + + EC LR+L ++H + CL + R
Sbjct: 1536 VVQSVLGDNTAGGYATAAAGVETVDECGLRYLMAMKQHEYLMVCLPMKQR 1585
>AF016418-6|AAK18899.1| 248|Caenorhabditis elegans Hypothetical
protein C49G7.4 protein.
Length = 248
Score = 27.9 bits (59), Expect = 5.9
Identities = 25/97 (25%), Positives = 34/97 (35%), Gaps = 1/97 (1%)
Frame = +3
Query: 237 DPDAPSVKNPHFANGT-TGWLATSRATR*TPAKLCPSTWALDLRKRQACTDTCSSCTNNH 413
D D P+V+ P T T S R A CPS A + C D C N+
Sbjct: 113 DFDCPNVQFPRLTCSTITNEQCRSSVWRTIIATDCPS--ACGFCNQGGCVDGVMDCANDL 170
Query: 414 RSSHSTSRDSLTLRATNVPISKLPSSPRSTT*GSDCG 524
+S + ++ SS +T G CG
Sbjct: 171 SICNSVGMQEFVNQYCQRTCNRCSSSTAATGTGGSCG 207
>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical
protein R03E1.1 protein.
Length = 1043
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 230 HDRP*CAVRKEPTFREWHHWLVGNIQGNEVNSGETLS 340
HD V P+ WHH ++ + VN+ +TLS
Sbjct: 137 HDETMSTVSDAPSLHSWHHKMIVKNETVIVNATDTLS 173
>U40030-1|AAR12977.1| 235|Caenorhabditis elegans Hypothetical
protein T13C2.4 protein.
Length = 235
Score = 27.5 bits (58), Expect = 7.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 118 KYPSGVEVKEGNELTPTLVKDEPSVKWD 201
++ G VK + L P+L E +V+WD
Sbjct: 3 QHAKGASVKRASNLPPSLFPPEETVRWD 30
>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
Length = 1043
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 230 HDRP*CAVRKEPTFREWHHWLVGNIQGNEVNSGETLS 340
HD V P+ WHH ++ + VN+ +TLS
Sbjct: 137 HDETMSTVSDAPSLHSWHHKMIVKNETVIVNATDTLS 173
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,980,397
Number of Sequences: 27780
Number of extensions: 336445
Number of successful extensions: 1082
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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