Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40228
(603 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g18100.1 68414.m02244 mother of FT and TF1 protein (MFT) iden... 53 1e-07
At1g65480.1 68414.m07429 flowering locus T protein (FT) identica... 47 1e-05
At5g03840.1 68418.m00354 terminal flower 1 protein (TFL1) identi... 45 3e-05
At4g20370.1 68417.m02973 twin sister of FT protein (TSF) / TFL1 ... 45 3e-05
At2g27550.1 68415.m03338 centroradialis protein, putative (CEN) ... 42 3e-04
At5g62040.1 68418.m07787 brother of FT and TFL1 protein (BFT) id... 41 5e-04
At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family... 29 1.8
At5g38830.1 68418.m04697 tRNA synthetase class I (C) family prot... 28 4.1
At5g25300.1 68418.m03001 F-box family protein PF0064: F-box doma... 28 5.5
At5g10530.1 68418.m01219 lectin protein kinase, putative similar... 28 5.5
At3g42730.1 68416.m04462 Ulp1 protease family protein contains P... 28 5.5
At3g08670.1 68416.m01007 expressed protein 28 5.5
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 27 7.2
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 27 7.2
At4g25170.1 68417.m03624 expressed protein 27 7.2
At4g04470.1 68417.m00649 peroxisomal membrane protein 22 kDa (PM... 27 7.2
At5g61780.1 68418.m07753 tudor domain-containing protein / nucle... 27 9.6
At5g19420.1 68418.m02314 zinc finger protein, putative / regulat... 27 9.6
At5g12350.1 68418.m01453 zinc finger protein, putative / regulat... 27 9.6
At4g12750.1 68417.m02002 expressed protein 27 9.6
>At1g18100.1 68414.m02244 mother of FT and TF1 protein (MFT)
identical to SP|Q9XFK7 MOTHER of FT and TF1 protein
{Arabidopsis thaliana}; contains Pfam profile PF01161:
Phosphatidylethanolamine-binding protein
Length = 173
Score = 53.2 bits (122), Expect = 1e-07
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Frame = +2
Query: 260 EPTFREWHHWLVGNIQ-GNEVNSGETLSQYVGSGPPEKTGLHRYVFLLYKQPSKLTFDEP 436
EP REW HW+V +I G + G+ + Y+ PP G+HRY+ +L++Q S +
Sbjct: 77 EPNMREWVHWIVVDIPGGTNPSRGKEILPYMEPRPP--VGIHRYILVLFRQNSPV----- 129
Query: 437 RLTNTSSDKRANFKIAEFAKKYNLGI 514
L RANF FA ++LG+
Sbjct: 130 GLMVQQPPSRANFSTRMFAGHFDLGL 155
Score = 31.1 bits (67), Expect = 0.59
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +3
Query: 213 QYYTLAMTDPDAPSVKNPH 269
+ YTL MTDPDAPS P+
Sbjct: 61 ELYTLVMTDPDAPSPSEPN 79
>At1g65480.1 68414.m07429 flowering locus T protein (FT) identical
to SP|Q9SXZ2 FLOWERING LOCUS T protein {Arabidopsis
thaliana}; contains Pfam profile PF01161:
Phosphatidylethanolamine-binding protein
Length = 175
Score = 46.8 bits (106), Expect = 1e-05
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Frame = +2
Query: 263 PTFREWHHWLVGNIQGNEVNS-GETLSQYVGSGPPEKTGLHRYVFLLYKQPSKLTFDEPR 439
P RE+ HWLV +I + G + Y P G+HR VF+L++Q + T P
Sbjct: 80 PHLREYLHWLVTDIPATTGTTFGNEIVCY--ENPSPTAGIHRVVFILFRQLGRQTVYAP- 136
Query: 440 LTNTSSDKRANFKIAEFAKKYNLGIRLRA 526
R NF EFA+ YNLG+ + A
Sbjct: 137 ------GWRQNFNTREFAEIYNLGLPVAA 159
Score = 34.7 bits (76), Expect = 0.048
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = +3
Query: 216 YYTLAMTDPDAPSVKNPHFANGTTGWLAT 302
+YTL M DPD PS NPH WL T
Sbjct: 64 FYTLVMVDPDVPSPSNPHLRE-YLHWLVT 91
>At5g03840.1 68418.m00354 terminal flower 1 protein (TFL1) identical
go SP|P93003 TERMINAL FLOWER 1 protein {Arabidopsis
thaliana}; contains Pfam profile PF01161:
Phosphatidylethanolamine-binding protein
Length = 177
Score = 45.2 bits (102), Expect = 3e-05
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Frame = +2
Query: 260 EPTFREWHHWLVGNIQGN-EVNSGETLSQYVGSGPPEKTGLHRYVFLLYKQPSKLTFDEP 436
+P +E HW+V NI G + G+ + Y P G+HR+VF+L++Q +
Sbjct: 82 DPFLKEHLHWIVTNIPGTTDATFGKEVVSY--ELPRPSIGIHRFVFVLFRQKQR------ 133
Query: 437 RLTNTSSDKRANFKIAEFAKKYNLGIRLRA 526
R+ + R +F +FA +Y+LG+ + A
Sbjct: 134 RVIFPNIPSRDHFNTRKFAVEYDLGLPVAA 163
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 216 YYTLAMTDPDAPSVKNPHFANGTTGWLATS 305
++TL M DPD P +P F W+ T+
Sbjct: 67 FFTLVMIDPDVPGPSDP-FLKEHLHWIVTN 95
>At4g20370.1 68417.m02973 twin sister of FT protein (TSF) / TFL1
like protein identical to SP|Q9S7R5 TWIN SISTER of FT
protein (TFL1 like protein) {Arabidopsis thaliana};
contains Pfam profile PF01161:
Phosphatidylethanolamine-binding protein
Length = 175
Score = 45.2 bits (102), Expect = 3e-05
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Frame = +2
Query: 263 PTFREWHHWLVGNIQGNEVNS-GETLSQYVGSGPPEKTGLHRYVFLLYKQPSKLTFDEPR 439
P RE+ HWLV +I N+ G + Y PP +G+HR V +L++Q + T P
Sbjct: 80 PHQREYLHWLVTDIPATTGNAFGNEVVCYESPRPP--SGIHRIVLVLFRQLGRQTVYAPG 137
Query: 440 LTNTSSDKRANFKIAEFAKKYNLGIRLRAT 529
R F EFA+ YNLG+ + A+
Sbjct: 138 W-------RQQFNTREFAEIYNLGLPVAAS 160
Score = 33.9 bits (74), Expect = 0.083
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = +3
Query: 216 YYTLAMTDPDAPSVKNPHFANGTTGWLAT 302
+YTL M DPD PS NPH WL T
Sbjct: 64 FYTLVMVDPDVPSPSNPH-QREYLHWLVT 91
>At2g27550.1 68415.m03338 centroradialis protein, putative (CEN)
strong similarity to SP|Q41261 CENTRORADIALIS protein
{Antirrhinum majus}; contains Pfam profile PF01161:
Phosphatidylethanolamine-binding protein
Length = 175
Score = 41.9 bits (94), Expect = 3e-04
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Frame = +2
Query: 260 EPTFREWHHWLVGNIQGN-EVNSGETLSQYVGSGPPEKTGLHRYVFLLYKQPSKLTFDEP 436
+P RE HW+V +I G +V+ G+ + Y P G+HR+V+LL+KQ +
Sbjct: 80 DPYLREHLHWIVTDIPGTTDVSFGKEIIGY--EMPRPNIGIHRFVYLLFKQTRR-----G 132
Query: 437 RLTNTSSDKRANFKIAEFAKKYNLGIRLRA 526
+ + S R F EFA + +LG+ + A
Sbjct: 133 SVVSVPS-YRDQFNTREFAHENDLGLPVAA 161
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 216 YYTLAMTDPDAPSVKNPHFANGTTGWLAT 302
++TL MTDPD P +P+ W+ T
Sbjct: 65 FFTLVMTDPDVPGPSDPYLRE-HLHWIVT 92
>At5g62040.1 68418.m07787 brother of FT and TFL1 protein (BFT)
identical to SP|Q9FIT4 BROTHER of FT and TFL1 protein
{Arabidopsis thaliana}; contains Pfam profile PF01161:
Phosphatidylethanolamine-binding protein
Length = 177
Score = 41.1 bits (92), Expect = 5e-04
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +2
Query: 263 PTFREWHHWLVGNIQGN-EVNSGETLSQYVGSGPPEKTGLHRYVFLLYKQ 409
P RE+ HW+V +I G + + G + +Y P G+HRYVF L+KQ
Sbjct: 80 PYMREYLHWMVTDIPGTTDASFGREIVRY--ETPKPVAGIHRYVFALFKQ 127
Score = 31.1 bits (67), Expect = 0.59
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 198 GRGPGQYYTLAMTDPDAPSVKNPHFANGTTGWLAT 302
G+ ++TL M DPDAPS NP+ W+ T
Sbjct: 58 GQDLRSFFTLIMMDPDAPSPSNPYMRE-YLHWMVT 91
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 34 MSTVAKSFEASQVVPDVIPKA-PAALLQVKYPSGVEVKEGNELTPTLVKDEPSVK 195
MS + +V+ DV+ P+ ++V + S V G+EL P+L+ +P V+
Sbjct: 1 MSREIEPLIVGRVIGDVLEMFNPSVTMRVTFNSNTIVSNGHELAPSLLLSKPRVE 55
>At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family
protein similar to SP|Q28141 ATP-dependent RNA helicase
A (Nuclear DNA helicase II) (DEAD-box protein 9) {Bos
taurus}; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 1015
Score = 29.5 bits (63), Expect = 1.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 217 YCPGPRPISLKARLSPELES 158
YCPGP P S + PEL++
Sbjct: 234 YCPGPSPSSADTEIKPELQN 253
>At5g38830.1 68418.m04697 tRNA synthetase class I (C) family protein
similar to SP|Q06752 Cysteinyl-tRNA synthetase (EC
6.1.1.16) (Cysteine--tRNA ligase) (CysRS) {Bacillus
subtilis}; contains Pfam profile PF01406: tRNA
synthetases class I (C)
Length = 511
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +3
Query: 162 SNSGERRAFSEMGRGPGQYYTLAMTDPDAPSVKNPHFANGTTGW 293
+ +GER A R P + PD PS ++P + G GW
Sbjct: 168 TRAGERVAVDSRKRNPADFALWKAAKPDEPSWESP-WGPGRPGW 210
>At5g25300.1 68418.m03001 F-box family protein PF0064: F-box domain;
similar to F-box protein family, AtFBX7 (GI:20197899)
[Arabidopsis thaliana]
Length = 464
Score = 27.9 bits (59), Expect = 5.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 307 LDVANQPVVPFAKCGFFTDGA 245
+DV N ++PF K F+ DGA
Sbjct: 174 IDVDNSEILPFRKISFYIDGA 194
>At5g10530.1 68418.m01219 lectin protein kinase, putative similar to
receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733; contains protein kinase domain,
Pfam:PF00069; contains legume lectins alpha and beta
domains, Pfam:PF00138 and Pfam:PF00139
Length = 651
Score = 27.9 bits (59), Expect = 5.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2
Query: 329 RRSLPRCPGCCQPASGAIREMWVLYGR 249
R+S+ R G +P + + +MW LYG+
Sbjct: 532 RKSVDRRQGRVEPVTNLVEKMWDLYGK 558
>At3g42730.1 68416.m04462 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At1g52020, At3g24390, At4g05280,
At1g25886, At4g03300
Length = 1314
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -2
Query: 350 PRTGTKFRRSLPRCPGCCQPASGAIREMWVLY-GRRIRVGHGQSVVLS 210
P+ F L CCQ + + EMW+++ G IR G + +L+
Sbjct: 110 PKNKASFNAKLVLGLICCQLVTKKVNEMWIVFGGHPIRFGLREFSILT 157
>At3g08670.1 68416.m01007 expressed protein
Length = 567
Score = 27.9 bits (59), Expect = 5.5
Identities = 19/95 (20%), Positives = 42/95 (44%)
Frame = +3
Query: 240 PDAPSVKNPHFANGTTGWLATSRATR*TPAKLCPSTWALDLRKRQACTDTCSSCTNNHRS 419
P +PS ++ A +T +S + TP+++ P + + + K + + S +
Sbjct: 193 PSSPSSRSSSSARPSTPTRTSSASRSSTPSRIRPGSSSSSMDKARPSLSSRPSTPTSRPQ 252
Query: 420 SHSTSRDSLTLRATNVPISKLPSSPRSTT*GSDCG 524
++S + + R + P + SP ST+ + G
Sbjct: 253 LSASSPNIIASRPNSRPSTPTRRSPSSTSLSATSG 287
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +3
Query: 336 CPSTWALDLRKRQACTDTCSSCTNNHRSSHSTS-RDSLTLRATN 464
C W +DL + + C ++ +N H S S RD + L N
Sbjct: 290 CVGVWVVDLSRTEPCMAGDTAQSNGHPEKRSCSGRDPVVLNDNN 333
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +3
Query: 336 CPSTWALDLRKRQACTDTCSSCTNNHRSSHSTS-RDSLTLRATN 464
C W +DL + + C ++ +N H S S RD + L N
Sbjct: 290 CVGVWVVDLSRTEPCMAGDTAQSNGHPEKRSCSGRDPVVLNDNN 333
>At4g25170.1 68417.m03624 expressed protein
Length = 344
Score = 27.5 bits (58), Expect = 7.2
Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 7/58 (12%)
Frame = -1
Query: 417 FDGCLYK---RNTYLCRPVFSGG---PEPTYWDKVSPEFTS-LPWMLPTSQWCHSRNV 265
FD Y R+ Y C P GG P T P F S WM P+ CHSR +
Sbjct: 139 FDASSYSQLVRDKYECYPENGGGNQSPIATGMVHQVPSFGSDSDWMEPSMHLCHSRTL 196
>At4g04470.1 68417.m00649 peroxisomal membrane protein 22 kDa
(PMP22) identical to peroxisomal membrane protein
[Arabidopsis thaliana] gi|3980254|emb|CAA06834
Length = 190
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 347 VGSGPPEKTGLHRYVFLLYKQP 412
+GS PP+KT L RY+ L + P
Sbjct: 1 MGSSPPKKTTLQRYLSQLQQHP 22
>At5g61780.1 68418.m07753 tudor domain-containing protein / nuclease
family protein contains Pfam domains PF00567: Tudor
domain and PF00565: Staphylococcal nuclease homologue
Length = 985
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 582 TELLVQNRDVVVILRFVEVARNRIPRLYF 496
TEL V NRDV ++L V+ N I +Y+
Sbjct: 286 TELRVLNRDVRIVLEGVDKFNNLIGSVYY 314
>At5g19420.1 68418.m02314 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1124
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +3
Query: 420 SHSTSRDSLTLRATNVPISKLPSSPRSTT 506
S S + RAT+ PIS+ PS PRSTT
Sbjct: 841 SASVPGSRIASRATS-PISRRPSPPRSTT 868
>At5g12350.1 68418.m01453 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1062
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +3
Query: 420 SHSTSRDSLTLRATNVPISKLPSSPRSTT 506
S S + RAT+ PIS+ PS PRSTT
Sbjct: 805 SASVPGSRIVSRATS-PISRRPSPPRSTT 832
>At4g12750.1 68417.m02002 expressed protein
Length = 1108
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +1
Query: 49 KSFEASQVVPDVIPKAPAALLQVKYPSGV 135
+S ++S + PD++PK P +Q++ P G+
Sbjct: 304 RSSDSSLLFPDLLPKFPPNSVQMRMPFGL 332
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,220,030
Number of Sequences: 28952
Number of extensions: 316725
Number of successful extensions: 941
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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