Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40227
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    29   0.86 
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    29   0.86 
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    27   3.5  
SPAPB18E9.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      26   4.6  
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    25   8.0  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    25   8.0  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   8.0  

>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = +3

Query: 87  YLCLRSSL-LGASLIDILNLEFLIDLIMETPKNLII-YTLITRSLISPLIIMFPILLVFK 260
           Y C+RS + +   L+D+   E  I L+M+T KNLII  T      I    ++ P L V +
Sbjct: 130 YDCIRSGVSICNRLLDMEIFEPAISLLMKTHKNLIILLTYRDHDAIPTATLLNPTLDVSE 189

Query: 261 LTHWCCCIV 287
           +    C  V
Sbjct: 190 IQLESCLFV 198


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 12/33 (36%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
 Frame = +3

Query: 42  DTINVLIYVRYYD-SWYLCLRSSLLGASLIDIL 137
           D  NV+ Y+ ++D   +LC+ + LLG++L D++
Sbjct: 576 DKNNVIRYLSHFDFRGHLCIVTELLGSNLFDVI 608


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -1

Query: 584  DSLQKYIYTIKY*KALYKWKIEYILAIFITFYW 486
            ++++   YTI + +AL ++    +L +F  FYW
Sbjct: 1104 ENIESRPYTIDFPEALQQYSPRIVLHLFSFFYW 1136


>SPAPB18E9.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 90

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 156 DLIMETPKNLIIYTLITRSLISPLIIMFPILLVFKLTH 269
           ++I + P N I   LI    +SP+ I+ P+LL++ + H
Sbjct: 3   EVISQPPCN-IFRPLILSMHLSPVSILSPVLLIYLVIH 39


>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +3

Query: 246 LLVFKLTHWCCCIVWNKNFGTVKNIYDPSNK 338
           LLV  +  W  C++ + +F   ++++D  NK
Sbjct: 556 LLVSMMKEWFLCVIVDNDFQNGQSLFDVFNK 586


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = -1

Query: 446 EHFNSVVSIIINAMCKTGHKYF*LNFK*Q*TSADDPFV*GIIYVFYSTKVFVPNNTTAPM 267
           E  +S V +      + G+    L F    T+A DP++ GII   +   +   NN  + M
Sbjct: 564 EAISSAVKLDCAKAAELGNSVIPLLFNLVATNASDPYICGIIEDTFEDIIHAANNYES-M 622

Query: 266 CKL 258
           C++
Sbjct: 623 CEI 625


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = -1

Query: 686  ILTSLFLCQTLSNVICHVRKCSIKSQMSILFFYKDSLQKYIYTIKY*KALYKWKIEY 516
            +L    L      +I ++ K S+K    +   +K S Q Y+YT    + L +W I +
Sbjct: 2676 LLEKSALINQYKTIILNIVKASVKFYQVLRENFKSSTQGYVYTP---RDLTRWLISF 2729


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,748,122
Number of Sequences: 5004
Number of extensions: 56208
Number of successful extensions: 126
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)