Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40227
         (704 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.23 
SB_17844| Best HMM Match : Fibrinogen_C (HMM E-Value=0)                29   2.8  
SB_1228| Best HMM Match : PKD_channel (HMM E-Value=0)                  29   3.7  
SB_37670| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_25273| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_15536| Best HMM Match : MdcD (HMM E-Value=3.9)                      28   8.5  

>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = +3

Query: 123 LIDILNLEFLIDLI-METPKNLIIYTLITRSLISPLIIMFPILLVFKLTHWCCCIVWN 293
           LI I+N   L+ +I + T K LII  + T  L++ +II   +L+V  +TH    ++ N
Sbjct: 126 LIVIINTHKLLTVITINTHKLLIIIIINTHKLLTVIIITHKLLIVIIITHTLLIVIIN 183


>SB_17844| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
          Length = 1431

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +3

Query: 186  IIYTLITRSLISPLIIMFPILLVFKLTHWCCCIVWNKNFGTVKNIYD 326
            I Y+LI    ++ ++I FP+ L+F      CC  +  N   VK IYD
Sbjct: 1225 IAYSLIAIFFLAVVVIPFPLTLMFTPFFTKCCRPF-FNLNQVKPIYD 1270


>SB_1228| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1157

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +3

Query: 36  QFDTINVLIYVRYYDSWYLCLRSSLLGASLIDILNLEFLIDLIMETPKNLIIYTLITRSL 215
           +F T   L Y   Y  W LCL S+ + AS     +L +  +L  E   ++II  +    +
Sbjct: 341 KFKTPGCLPYCFVYLGWLLCLSSAGVAASFTIFYSLSWGGELANEWLTSVIISFIQDIGV 400

Query: 216 ISPL-IIMFPILL 251
             PL +  F +LL
Sbjct: 401 TQPLKVATFAVLL 413


>SB_37670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1039

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = +3

Query: 87  YLCLRSSLLGASLIDILNLEFLIDLIMETPKNLI----IYTLITRSLISPLIIMFP 242
           YLC   SL    L++   L+ L+ L+ + P N +    IY+L+    ++ L I  P
Sbjct: 729 YLCRSKSLQQQVLLNRQGLQMLVSLLQDPPSNRVFVAAIYSLLELCSLTELSINVP 784


>SB_25273| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 845

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +1

Query: 319 YMIPQTNGSSADV--YCYLKFNQKYLCPVLHMALIIIDTTELKCSSAET 459
           Y +P   GS   V  Y Y++    YL  V+H+ ++  D  EL+  S  T
Sbjct: 110 YFVPSIAGSYRRVPKYIYMEMGVAYLIQVVHVEVVGQDYMELRMISPTT 158


>SB_15536| Best HMM Match : MdcD (HMM E-Value=3.9)
          Length = 146

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 346 SADVYCYLKFNQKYLCPVLHMALIIIDTTELK 441
           S D Y Y K+  +Y+  ++ + +IIID  E+K
Sbjct: 2   SRDNYDYKKYINQYIIIIIIIIIIIIDQVEIK 33


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,819,450
Number of Sequences: 59808
Number of extensions: 351862
Number of successful extensions: 956
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)