Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40227
(704 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39851-2|AAF99874.1| 540|Caenorhabditis elegans Hypothetical pr... 29 3.2
AC006675-3|AAK84550.1| 335|Caenorhabditis elegans Serpentine re... 29 3.2
Z81557-2|CAB04536.1| 354|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z81119-1|CAB03331.1| 363|Caenorhabditis elegans Hypothetical pr... 28 7.5
U80024-3|AAK18893.1| 342|Caenorhabditis elegans Seven tm recept... 28 7.5
AL009246-5|CAA15839.1| 357|Caenorhabditis elegans Hypothetical ... 27 9.9
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for... 27 9.9
AF040648-7|AAK26140.1| 386|Caenorhabditis elegans Lethal protei... 27 9.9
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei... 27 9.9
AF000298-6|AAC48262.1| 340|Caenorhabditis elegans Seven tm rece... 27 9.9
>U39851-2|AAF99874.1| 540|Caenorhabditis elegans Hypothetical
protein C23G10.6 protein.
Length = 540
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = +3
Query: 9 YLIFIFRNNQFDTINVLIYVRYYDSWYLCLRSSLLGASLIDILNLEFLIDLIMETPKN 182
+L+F+F NQ TINVL+ + ++ + L N+ FLI + ET KN
Sbjct: 45 HLLFLFLINQTLTINVLVLSPAFGGSHMNFMAHLADTLTEAGHNVTFLIPVADETRKN 102
>AC006675-3|AAK84550.1| 335|Caenorhabditis elegans Serpentine
receptor, class h protein35 protein.
Length = 335
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +3
Query: 177 KNLIIYTLITRSLISPLIIMFPILLVFKLTHWCCCIVWNKNFGTVK 314
+N IIY I R + F I ++F TH+C K+FG +K
Sbjct: 10 ENPIIYNTIKR------VFAFSIAIIFPFTHYCVLTKSPKSFGILK 49
>Z81557-2|CAB04536.1| 354|Caenorhabditis elegans Hypothetical
protein F59A1.4 protein.
Length = 354
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -2
Query: 352 QPMIRLFEGSYMFF-TVPKFLFQTIQQH 272
QPMI + EG ++FF T P L +T+ +H
Sbjct: 61 QPMIFVNEGEFLFFSTNPLHLHKTVAKH 88
>Z81119-1|CAB03331.1| 363|Caenorhabditis elegans Hypothetical
protein T10H4.2 protein.
Length = 363
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +3
Query: 90 LCLRSSLLGASLIDILNLEFLIDLIMETPKNLIIYTLITRSLISPLIIMFPILLVFKL 263
+ + S+L GA ILN + L + + + TL+ +S I + ++ PI +F L
Sbjct: 226 ILVSSALFGAETYKILNAQGLACYAAKELQKQLFKTLVIQSSIPMIFMVLPITCMFLL 283
>U80024-3|AAK18893.1| 342|Caenorhabditis elegans Seven tm receptor
protein 190 protein.
Length = 342
Score = 27.9 bits (59), Expect = 7.5
Identities = 22/85 (25%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Frame = +3
Query: 24 FRNNQFDTINVLIYVRYYDSWYLCLRSSLLGASLIDIL---NLEFLIDLIMETPKNL--- 185
F N+ +IN+ ++ + ++ + SSL+ + +L L + ++ + NL
Sbjct: 182 FDKNETMSINLPAWIGVCQTSFM-VSSSLMCVFIFGVLCYKRLSNTLSIVSDAANNLQKQ 240
Query: 186 IIYTLITRSLISPLIIM-FPILLVF 257
+ Y+L+ ++LI PL++M FPI + F
Sbjct: 241 LFYSLVLQTLI-PLVLMHFPITIFF 264
>AL009246-5|CAA15839.1| 357|Caenorhabditis elegans Hypothetical
protein C47F8.6 protein.
Length = 357
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = +3
Query: 36 QFDTINVLIYVRYYDSWYLCLRSS 107
+F+ ++VL+ + + W+LCL+SS
Sbjct: 3 RFNRLSVLLPILIFTFWFLCLKSS 26
>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
protein.
Length = 4450
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 231 IMFPILLVFKLTHWCCCIVW 290
++ P+L LT CCCI W
Sbjct: 3911 LLLPLLAALLLTLLCCCIPW 3930
>AF040648-7|AAK26140.1| 386|Caenorhabditis elegans Lethal protein
805, isoform c protein.
Length = 386
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 231 IMFPILLVFKLTHWCCCIVW 290
++ P+L LT CCCI W
Sbjct: 20 LLLPLLAALLLTLLCCCIPW 39
>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
805, isoform b protein.
Length = 4450
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 231 IMFPILLVFKLTHWCCCIVW 290
++ P+L LT CCCI W
Sbjct: 3911 LLLPLLAALLLTLLCCCIPW 3930
>AF000298-6|AAC48262.1| 340|Caenorhabditis elegans Seven tm
receptor protein 122 protein.
Length = 340
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 530 WKIEYILAIFITFYWYLMFYY 468
WKI Y++ I IT WYL+ Y
Sbjct: 131 WKI-YVIPIIITILWYLVHGY 150
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,861,965
Number of Sequences: 27780
Number of extensions: 300386
Number of successful extensions: 808
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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